Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16o08
         (356 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   4.4  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   4.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   4.4  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            20   7.6  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -3

Query: 108 YANYNFAGFTF 76
           Y NYN  GF F
Sbjct: 223 YGNYNINGFNF 233


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -3

Query: 135 LRTGPTTSNYANYNFAGFTFITRC 64
           ++T     N+    F GFT  T C
Sbjct: 693 VKTRKIPENFNESKFIGFTMYTTC 716


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -3

Query: 135 LRTGPTTSNYANYNFAGFTFITRC 64
           ++T     N+    F GFT  T C
Sbjct: 783 VKTRKIPENFNESKFIGFTMYTTC 806


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 5/14 (35%), Positives = 11/14 (78%)
 Frame = -2

Query: 313 PDVKWLLEPIDIYN 272
           P++ WL + I++Y+
Sbjct: 52  PEITWLKDGIELYH 65


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,746
Number of Sequences: 438
Number of extensions: 2405
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8308335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)