Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16o02
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    74   2e-14
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    29   0.86 
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    28   1.1  
SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces pom...    27   3.5  

>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 74.1 bits (174), Expect = 2e-14
 Identities = 33/61 (54%), Positives = 43/61 (70%)
 Frame = +2

Query: 2   KNFITQGNYENRTVFESLDIGWQLLRIFPKEMLKRIPASTLAEFYPRDSRH*ACNLGVLV 181
           K FI+QG YENRT+FE+LD+ W LLRIFP+EML RIP   L ++Y R S +   +  V+ 
Sbjct: 438 KTFISQGAYENRTIFETLDLAWSLLRIFPREMLTRIPKKILDQYYSRSSAYTESSKDVID 497

Query: 182 N 184
           N
Sbjct: 498 N 498


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 21/69 (30%), Positives = 31/69 (44%)
 Frame = +3

Query: 51  PWTSAGSCCVSSPRRC*NVSRLPPWPNSTRETPAIKPATLECS*MCSELPSTLTIRYYMM 230
           PW    +   S+P    N S LPPW   T+++ A++P+ L  S     +P T        
Sbjct: 440 PWQQPAAP-QSAPALSMNPSSLPPWQQPTQQS-AVQPSNLVPSQNAPFIPGTSAPLPPTT 497

Query: 231 CYKFGVPVP 257
               GVP+P
Sbjct: 498 FAPPGVPLP 506


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +2

Query: 2   KNFITQGNYENRTVFESLDIGWQLLRIFP 88
           +N++TQ N+++  + ESLD   + L +FP
Sbjct: 433 ENYLTQENFDSDNLSESLDNSVENLTVFP 461


>SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 578 FNVLNMPTTNWICS 537
           FN LN+P T WIC+
Sbjct: 90  FNTLNVPITLWICA 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,354,989
Number of Sequences: 5004
Number of extensions: 42610
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)