Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16o02
         (708 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41015-2|AAA82311.1|  491|Caenorhabditis elegans Vacuolar h atpa...    92   4e-19
AC006708-2|AAF60418.1|  501|Caenorhabditis elegans Temporarily a...    78   7e-15
U12964-8|AAK93848.1|  231|Caenorhabditis elegans Hypothetical pr...    28   7.5  

>U41015-2|AAA82311.1|  491|Caenorhabditis elegans Vacuolar h atpase
           protein 12 protein.
          Length = 491

 Score = 91.9 bits (218), Expect = 4e-19
 Identities = 40/47 (85%), Positives = 45/47 (95%)
 Frame = +2

Query: 2   KNFITQGNYENRTVFESLDIGWQLLRIFPKEMLKRIPASTLAEFYPR 142
           KNFITQG+YENR+VFESLDIGWQLLRIFP+EMLKRIP STL ++YPR
Sbjct: 440 KNFITQGHYENRSVFESLDIGWQLLRIFPREMLKRIPESTLEKYYPR 486


>AC006708-2|AAF60418.1|  501|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 300 protein.
          Length = 501

 Score = 77.8 bits (183), Expect = 7e-15
 Identities = 33/47 (70%), Positives = 40/47 (85%)
 Frame = +2

Query: 2   KNFITQGNYENRTVFESLDIGWQLLRIFPKEMLKRIPASTLAEFYPR 142
           KNFI QG YENRT+ ESL+IGW+LLRIFP+EMLKRIP + L ++Y R
Sbjct: 452 KNFIAQGRYENRTIVESLNIGWELLRIFPREMLKRIPETLLEKYYKR 498


>U12964-8|AAK93848.1|  231|Caenorhabditis elegans Hypothetical
           protein F26F4.12 protein.
          Length = 231

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -2

Query: 203 RGQFRTHSRALQGCRLNGGSLSGRIRPGWKPGYVSASPWGRY 78
           R  +  HS  +    L+G +   +   GW P  +SAS W  +
Sbjct: 106 RASYNNHSPIVDHLLLSGANKESKTNEGWTP-LLSASNWANF 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,954,044
Number of Sequences: 27780
Number of extensions: 239759
Number of successful extensions: 536
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)