Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16n23
         (300 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    27   0.78 
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    24   5.5  
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    23   7.3  
SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr...    23   7.3  
SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2 |Schizosa...    23   9.6  

>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 26.6 bits (56), Expect = 0.78
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 120 RYLSTWEL*TKTNIYIFFINKFPPLFY*VPSEILQK 227
           +Y S W+L + TN+ +F +    P    +P  +LQ+
Sbjct: 521 KYRSAWDLLSFTNLDLFCVISCIPKLKDIPKRVLQR 556


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 121 DTYQHGNCEQRLIYIYFL*TNFHLC 195
           D Y+HG CE +  +I+     F+ C
Sbjct: 85  DEYRHGTCESKCGHIFRKGEVFYRC 109


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 293 FQIVFILL*KEHYMQKEVTGDIFLKNFTGYLI 198
           FQI+ + L    Y+  +  GDIF KNF   LI
Sbjct: 297 FQIMELAL---DYVSSDNIGDIFSKNFLHCLI 325


>SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 247

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 270 IKRTLHAEGGYR*HFFEEFHWVLNRTKVEI 181
           +K  L  EG  R  FF EF  +LN TK ++
Sbjct: 94  LKYKLDGEGRKR--FFNEFLPILNDTKADV 121


>SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 203 LIEQRWKFVYKKYIYISLCSQ 141
           L+E+R  FV+K Y Y+    Q
Sbjct: 198 LVERRAVFVHKGYAYVPFSEQ 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,072,520
Number of Sequences: 5004
Number of extensions: 19239
Number of successful extensions: 30
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)