Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16n11
         (478 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   2.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   5.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   5.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   6.8  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   9.0  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 1   GLRLEKSVSSCFFVLVRDLF 60
           G  L +    CFF L+RD F
Sbjct: 383 GAELMQETHVCFFSLLRDAF 402


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 210  KIKGTLNPATPYLTFQLN 263
            KI  T    +PY TFQL+
Sbjct: 1686 KIPETAEDISPYATFQLS 1703


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 210  KIKGTLNPATPYLTFQLN 263
            KI  T    +PY TFQL+
Sbjct: 1682 KIPETAEDISPYATFQLS 1699


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 20  LFRLVFLCSFVICFSEL 70
           L   V++ SFVICF  L
Sbjct: 185 LVATVWILSFVICFPPL 201


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 5/8 (62%), Positives = 8/8 (100%)
 Frame = +1

Query: 286 FLLCYFCV 309
           ++LCYFC+
Sbjct: 184 WILCYFCI 191


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,111
Number of Sequences: 438
Number of extensions: 1688
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)