Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16n05
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   3.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   3.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   4.5  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   5.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.8  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 5/12 (41%), Positives = 8/12 (66%)
 Frame = -1

Query: 137 CCWICNSYNLYQ 102
           CCW+C+    Y+
Sbjct: 466 CCWVCDQCEEYE 477


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 5/12 (41%), Positives = 8/12 (66%)
 Frame = -1

Query: 137 CCWICNSYNLYQ 102
           CCW+C+    Y+
Sbjct: 556 CCWVCDQCEEYE 567


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = -3

Query: 420 TIESVDRSSRVLFP 379
           ++  +DR+SR++FP
Sbjct: 419 SVSKIDRASRIVFP 432


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -1

Query: 158 EPALPRYCCWICNSYN 111
           +P  P YC W  N+ N
Sbjct: 5   QPNRPSYCTWELNATN 20


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -1

Query: 137 CCWICNSYNLYQL 99
           CCW C +   YQ+
Sbjct: 605 CCWHCFNCTQYQI 617


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,454
Number of Sequences: 438
Number of extensions: 4122
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)