Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16n01
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    31   0.15 
SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug...    28   1.4  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    27   2.5  
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    26   5.8  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    26   5.8  
SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1...    25   7.7  

>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 587 GDWFVMFYGAACVECQRLHAVWESV 661
           G WF+ +Y  +C  C+RL  +W+++
Sbjct: 43  GTWFIKYYLPSCGACKRLGPMWDNM 67



 Score = 28.3 bits (60), Expect = 1.1
 Identities = 7/28 (25%), Positives = 15/28 (53%)
 Frame = +2

Query: 593 WFVMFYGAACVECQRLHAVWESVGATLK 676
           WF+ FY + C +C  +   W ++   ++
Sbjct: 301 WFIQFYSSECDDCDDVSTAWYAMANRMR 328


>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
           Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +2

Query: 476 DENEIYGFFEKNQTPAVKELTDKIFEHLTQAATGATT 586
           DE+EIY +FE   T   K +T+++ E L   A+G  T
Sbjct: 103 DEHEIYAYFETPTTE--KAVTEQLAEKLCVDASGYVT 137


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
 Frame = +2

Query: 374 KTVNSHLARLYNPSKEPALIFYRHGVALLYSGEA-----DENEIYGFFEKNQTPAVKELT 538
           +T +  + +  N ++ P L+  RHGVA  YS  +     +  ++  +    + P V ELT
Sbjct: 270 RTDDEKVIKTLNVTRLPHLVAIRHGVAFSYSERSVSAMRNTFQLIKWASLLKYPLVPELT 329

Query: 539 DKIFEHL 559
             + E+L
Sbjct: 330 PAVVENL 336


>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 34/139 (24%), Positives = 53/139 (38%), Gaps = 10/139 (7%)
 Frame = +2

Query: 293 CETCKKLEQHVESLQEDFKKHLNAMSVKT---VNSHLARLYNPSKEPALIFYRHGVA--L 457
           C  CK L    E L   F+ H + +  K     +S +A  Y+ +  P LI++    +  +
Sbjct: 51  CGHCKSLAPVYEELGALFEDHNDVLIGKIDADTHSDVADKYHITGFPTLIWFPPDGSEPV 110

Query: 458 LYSGEADENEIYGFF-EKNQTPAVKELTDKIFEHLTQAATGATT----GDWFVMFYGAAC 622
            YS   D + +  F  EK      K +       L              D  V FY   C
Sbjct: 111 QYSNARDVDSLTQFVSEKTGIKKRKIVLPSNVVELDSLNFDKVVMDDKKDVLVEFYADWC 170

Query: 623 VECQRLHAVWESVGATLKS 679
             C+RL   +E++G   K+
Sbjct: 171 GYCKRLAPTYETLGKVFKN 189


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = -2

Query: 172 YKRYYKIHFNFKW*KQFMCFNIFISIFVEVSLLTLFI 62
           Y  Y+K  F F W K      + I     V L+ LFI
Sbjct: 213 YHVYHKAPFTFYWFKWLFLTGVCIGCVCSVKLVGLFI 249


>SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 221

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 77  QTYFYKNTYKNIKAHKLLLPFEIKMNFV-IPFVSLLLWCNNV 199
           ++YF K+ +  +KA+ +L P     NF  +P V  +++ N V
Sbjct: 161 KSYFRKHYWPTLKANYILWPAVQLFNFTFVPLVLQVIFANAV 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,439,605
Number of Sequences: 5004
Number of extensions: 44849
Number of successful extensions: 125
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)