Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16n01
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0618 - 4941906-4942118,4942231-4942343,4942534-4942651,494...    29   2.6  
09_04_0345 + 16876489-16876614,16876718-16876876,16877989-168781...    29   2.6  
03_02_0621 - 9923163-9923245,9924163-9924338,9924437-9924495,992...    29   3.4  
05_01_0410 - 3234455-3234466,3234851-3234950,3235037-3235161,323...    29   4.5  
08_02_0593 + 19078264-19078609,19078724-19082256                       28   7.9  

>11_01_0618 -
           4941906-4942118,4942231-4942343,4942534-4942651,
           4942762-4942881,4942964-4943101,4943392-4943517,
           4943659-4943847,4943951-4944238,4944344-4944374,
           4945014-4945216
          Length = 512

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 26/89 (29%), Positives = 35/89 (39%), Gaps = 8/89 (8%)
 Frame = +2

Query: 293 CETCKKLEQHVESLQEDFKKHLNAMSVKTV------NSHLARLYNPSKEPAL-IFYRHGV 451
           C  CKKL    E   ++  KH   + +  V      N  LA  Y     P L IF   G 
Sbjct: 69  CGHCKKLAPEYEKAAQELSKHDPPIVLAKVDANDEKNKPLATKYEIQGFPTLKIFRNQGK 128

Query: 452 ALL-YSGEADENEIYGFFEKNQTPAVKEL 535
            +  Y G  +   I  + +K   PA KE+
Sbjct: 129 NIQEYKGPREAEGIVEYLKKQVGPASKEI 157


>09_04_0345 +
           16876489-16876614,16876718-16876876,16877989-16878102,
           16878701-16878882,16879142-16879241,16879597-16879638,
           16879818-16879994,16880084-16880175,16880633-16880779,
           16880832-16881036
          Length = 447

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/61 (27%), Positives = 25/61 (40%)
 Frame = +2

Query: 494 GFFEKNQTPAVKELTDKIFEHLTQAATGATTGDWFVMFYGAACVECQRLHAVWESVGATL 673
           G  EK +  A  EL  + F+ L   +       W V F+   C  C++L   W+     L
Sbjct: 157 GSSEKTEPSASIELNSQNFDKLVTKSKDL----WIVEFFAPWCGHCKKLAPEWKKAAKNL 212

Query: 674 K 676
           K
Sbjct: 213 K 213


>03_02_0621 -
           9923163-9923245,9924163-9924338,9924437-9924495,
           9924952-9924984,9925060-9925185
          Length = 158

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 593 WFVMFYGAACVECQRLHAVWESVGATLK 676
           WFV F    C  C+ L  +WE +G  ++
Sbjct: 61  WFVKFCVPWCKHCKNLGTLWEDLGKVME 88


>05_01_0410 -
           3234455-3234466,3234851-3234950,3235037-3235161,
           3235244-3235400,3235644-3235735,3235828-3235855,
           3235949-3236066,3236411-3236466,3236556-3236653,
           3236864-3236948,3237428-3237600
          Length = 347

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 32/138 (23%), Positives = 48/138 (34%), Gaps = 10/138 (7%)
 Frame = +2

Query: 293 CETCKKLEQHVESLQEDFKKHLNAMSVKT-VNSH--LARLYNPSKEPALIFYRHG--VAL 457
           C  CKKL    E L   FKK  + +  K   + H  +   Y  S  P + ++  G     
Sbjct: 59  CGHCKKLAPEYEKLGASFKKAKSVLIAKVDCDEHKSVCSKYGVSGYPTIQWFPKGSLEPK 118

Query: 458 LYSGEADENEIYGFFEKNQTPAVK-ELTDKIFEHLTQAATGAT----TGDWFVMFYGAAC 622
            Y G+     +  +        VK          LT     +     T D  V FY   C
Sbjct: 119 KYEGQRTAEALAEYVNSEAATNVKIAAVPSSVVVLTPETFDSVVLDETKDVLVEFYAPWC 178

Query: 623 VECQRLHAVWESVGATLK 676
             C+ L  ++E + +  K
Sbjct: 179 GHCKHLAPIYEKLASVYK 196


>08_02_0593 + 19078264-19078609,19078724-19082256
          Length = 1292

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 634  LAFNTSCPIKHDKPISCCCTSSCLC 560
            + FN++  I HDKP+   C  SC C
Sbjct: 1079 IPFNSNGAIVHDKPLIFECGPSCRC 1103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,985,347
Number of Sequences: 37544
Number of extensions: 229870
Number of successful extensions: 526
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)