Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16m24
         (611 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    29   0.70 
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    28   1.2  
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    27   1.6  
SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1 |Schizos...    26   3.7  
SPAC23D3.11 |ayr1||1-acyldihydroxyacetone phosphate reductase |S...    25   8.6  
SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.6  

>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 412 GNISRKLHTDEIPVKEIEIPVQWGRLSAKLW 504
           GNIS+ L TD   +KE+E  V+  +    LW
Sbjct: 261 GNISKILETDPTSIKELEEEVETQKRLTALW 291


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 15/50 (30%), Positives = 31/50 (62%)
 Frame = +1

Query: 379 VVELKPTSSLFGNISRKLHTDEIPVKEIEIPVQWGRLSAKLWGTDQRRPI 528
           V  L+ T+S F +++RKL++D+I V +I   ++    +  +W ++ R P+
Sbjct: 604 VFMLEQTNSTFSSLNRKLYSDKIIVGQIYDHIKDYNKALAIW-SEVRIPV 652


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 410 NSDEVGFNSTTLENKIAWRNKYFPIL 333
           +S + GFN T+L NK   RNK F ++
Sbjct: 663 SSKKAGFNPTSLSNKRKQRNKNFMMI 688


>SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 377 RWLN*NRLHHYLEILVENYTLMRFLL 454
           +WL+  RLHHY  +   +Y + + LL
Sbjct: 78  KWLSTTRLHHYFTV-TNSYVVAKLLL 102


>SPAC23D3.11 |ayr1||1-acyldihydroxyacetone phosphate reductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 296

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -1

Query: 608 IWSGFLHNIGAIGSQVP 558
           IW+G++ + G +GS +P
Sbjct: 254 IWAGYMSSAGRVGSMLP 270


>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 386

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = -1

Query: 353 NKYFPILICTFSSVNSNRLLHFHTKLY*YKSYNTRPDKSRVLHIRNTALLHAMSVVQIGY 174
           N Y P ++ T+ S+   RLLH H  L         P + R L  R       +   +IG+
Sbjct: 113 NTYLPSILSTYGSLPIRRLLH-HLSLMLPSFNELTPTQQRRLLTRALESKKGIQFEKIGW 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,455,281
Number of Sequences: 5004
Number of extensions: 49054
Number of successful extensions: 113
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)