Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16m24
         (611 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1129 + 10466943-10467326,10467440-10467574,10467670-104679...    28   5.1  
04_04_1020 + 30179214-30179285,30179597-30179671,30179839-301799...    28   5.1  
06_02_0036 - 10844876-10846173,10846490-10847012                       28   6.7  
05_01_0573 - 5083030-5083151,5084639-5084738,5084790-5084829,508...    28   6.7  
12_02_1185 + 26786543-26786545,26786676-26786686,26787032-267872...    27   8.9  
08_01_0026 - 189876-190073,190473-190559,190654-190877,190961-19...    27   8.9  
05_01_0543 - 4733239-4733704,4733805-4734190                           27   8.9  

>07_01_1129 +
           10466943-10467326,10467440-10467574,10467670-10467972,
           10468155-10468247
          Length = 304

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 437 VCSFLLIFPNSDEVGFNSTTLENKIAWRNKY 345
           V   L  FP  + + F S  L +K+ WR KY
Sbjct: 157 VVDILRCFPCLENLYFKSCELTSKVVWRKKY 187


>04_04_1020 +
           30179214-30179285,30179597-30179671,30179839-30179947,
           30180425-30180642,30180729-30181309,30181387-30182185
          Length = 617

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -2

Query: 562 CLHYLAIHVKLISVCVGLYPIILPIGDPIALVFRFL*QESHQ 437
           C  ++A+ V +++    +Y I+ P G P+  V + L   SH+
Sbjct: 274 CASFVAVAVVVLAATAPMYRILPPAGSPLKSVIQVLVAFSHK 315


>06_02_0036 - 10844876-10846173,10846490-10847012
          Length = 606

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
 Frame = -3

Query: 231 ITYTKHGFTTRYECCTNRLCLYVIDPRHVT*AKRHFSK----LTDKCDLVLTNISKIMKY 64
           + YT  G T  Y+C T+++ +   +  H     R+ SK          ++  N+ K +  
Sbjct: 454 VAYTTSGTTWHYKCLTDKMRMPRAEVNHKPMWTRYLSKQGCHSLQHTKMLSLNVGKKINT 513

Query: 63  LLNFY*ISLRFRXLIAKLS 7
           LL  Y    RF+  I KLS
Sbjct: 514 LLLLYVTQERFKG-IEKLS 531


>05_01_0573 -
           5083030-5083151,5084639-5084738,5084790-5084829,
           5085122-5085567
          Length = 235

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 478 WGRLSAKLWGTDQRRPILALHGWQ-DNAGTWDPIAPMLC 591
           WG  S+KLWG D+ R     +GWQ  +   W  ++   C
Sbjct: 47  WGGSSSKLWG-DEARIYPMGNGWQGGSTDHWSSVSRSHC 84


>12_02_1185 +
           26786543-26786545,26786676-26786686,26787032-26787262,
           26787892-26788012,26788263-26788393,26788718-26788760,
           26788963-26789220
          Length = 265

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -2

Query: 565 RCLHYLAIHVKLISVCVGLYPII 497
           RC HY+ +   ++ +CVGL  ++
Sbjct: 206 RCRHYMTMAAYIVGICVGLLNLL 228


>08_01_0026 -
           189876-190073,190473-190559,190654-190877,190961-191261,
           191369-191467,193465-193602,193691-193879
          Length = 411

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 413 EILVENYTLMRFLLKKSKYQCNGVAYRQNYGVQ 511
           +++ +N  L+ F  KKSK    G+AY  +Y V+
Sbjct: 208 DMISQNERLLVFTSKKSKEASEGIAYEWSYVVE 240


>05_01_0543 - 4733239-4733704,4733805-4734190
          Length = 283

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 505 GTDQRRPILALHGWQDNAGTWDPIAPMLCK 594
           G D    ++  HG+  ++  WD +AP L K
Sbjct: 13  GGDGETTVVLAHGYGGSSHIWDDVAPALAK 42


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,613,073
Number of Sequences: 37544
Number of extensions: 277412
Number of successful extensions: 540
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)