Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16m23
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    27   2.3  
SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces po...    25   6.9  
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha...    25   6.9  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   9.1  
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54...    25   9.1  
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    25   9.1  

>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 19/62 (30%), Positives = 31/62 (50%)
 Frame = +3

Query: 21  KVKEFDRSSLKFVTYLKMVLPPNYKVFKAMFPLDLSVMEGSGSQSPLALLAATCSRLGAA 200
           ++K  + S L F      + P + K    + P+ L++ E S SQSP   L+  C +L  A
Sbjct: 520 EIKFPEISDLLFFNLTGSIFPTSDKKHIVVSPVMLTMAE-SLSQSPADSLSDVCKKLYIA 578

Query: 201 NM 206
           N+
Sbjct: 579 NL 580


>SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 192

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = +3

Query: 195 AANMGPEQQQSDKEQQH--HFSP 257
           A N  P+QQQ  ++QQH  H +P
Sbjct: 148 ALNQPPQQQQQQQQQQHQQHATP 170


>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +3

Query: 63  YLKMVLPPNYKVFKAMFPLDLSVMEGSGSQSPLALLAATCSRLGAAN 203
           YL ++LPP       +  L+L+     G+ +   +  A C R   A+
Sbjct: 45  YLNLILPPEENAITNLSMLELATNIAKGNYTSYNVTKAFCHRAALAH 91


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 75  VLPPNYKVFKAMFPLDLSVMEGSGSQSPL 161
           V P N  +FK +FP  LS ++ + S  P+
Sbjct: 746 VTPNNLVIFKNLFPEVLSFVKSNHSYDPI 774


>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
           Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +3

Query: 21  KVKEFDRSSLKFVTYLKMVLPPN-YKVFKAMFPLDLSVMEGSGSQSPLALLAATC 182
           ++  + ++S    T L    P N ++ +   FP DLS+M G     PL  L   C
Sbjct: 750 EISSWKKASEYMDTNLGKKCPENAFQGWTWQFPNDLSIMNGVEDYIPLEPLPINC 804


>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 23/60 (38%), Positives = 28/60 (46%)
 Frame = +3

Query: 66  LKMVLPPNYKVFKAMFPLDLSVMEGSGSQSPLALLAATCSRLGAANMGPEQQQSDKEQQH 245
           L  VLPP   +FK+   L LS +E   SQS   + AAT S     N+G E       Q H
Sbjct: 322 LLAVLPP---IFKS---LRLSYLEPK-SQSEKGIRAATGSNHSPGNIGTELGVITSHQSH 374


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,414,125
Number of Sequences: 5004
Number of extensions: 18671
Number of successful extensions: 50
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)