Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16m22
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1250.04c |atl1||alkyltransferase-like protein Atl1|Schizosac...    30   0.37 
SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyce...    28   1.5  
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    27   2.6  
SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i...    26   4.6  
SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   6.1  
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p...    26   6.1  
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    26   6.1  
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    25   8.0  
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    25   8.0  

>SPAC1250.04c |atl1||alkyltransferase-like protein
           Atl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +3

Query: 333 DFQKNVWMKLQEIPFGSTYTYSDITKALGRPTTHARAV 446
           +F   V+  + EIP+G   TY +I + +G P ++AR V
Sbjct: 5   EFYTKVYDAVCEIPYGKVSTYGEIARYVGMP-SYARQV 41


>SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 456

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 285 NGNLKKFSVPLKTLGSDFQKNVWMKLQEIPFGS 383
           +G  KK   P K   +  Q N W KL E+P G+
Sbjct: 338 DGGYKKAGSPSKCPANSTQFNAWEKLPEMPEGA 370


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -2

Query: 496 LLMFNKPFFTIDSTIKSTALAWVVGRPNALVMSLYV*VEPK 374
           L +FN  F    S +K  A+ W VG    LV  L   + PK
Sbjct: 158 LPVFNSGFSVSSSDVKFRAVQWAVGEAILLVCVLLNFIPPK 198


>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 201

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +3

Query: 342 KNVWMKLQEIPFGSTYTYSDITKALGRPTTHARAVDLIVESIVKNGLLN 488
           K  W+    + FG   +  DI K + +  T  R   L    I+K+G L+
Sbjct: 141 KTPWLDGHHVVFGEVLSGYDIVKKISKAETDNRDKPLEDVKIIKSGQLS 189


>SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 330

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = +3

Query: 300 KFSVPLKTLGSDFQ----KNVWMKLQEIPFGSTYTYSDITKALGRPTTHARAV 446
           +F V  +TL S F      + W  L  +PF STY   +  +A   P+T+  A+
Sbjct: 270 QFLVSFQTLPSFFSFPLVTDNWQHLAALPFNSTY---ETFRAFDHPSTNGPAI 319


>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 591

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 487 FNKPFFTIDSTIKSTALAWVV 425
           FN P+ T DS +K  A+ W+V
Sbjct: 193 FNNPWPTNDSDVKFRAVQWIV 213


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 465 IVKNGLLNMRRNMQTIYETNIP 530
           +VKNG  NM +++Q  ++ NIP
Sbjct: 763 LVKNGCSNMVKHIQNCHKFNIP 784


>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 387 KWSQREFLVISSRHSFESQNQEFSAVQRISLDFH 286
           KW     + +S+RH+   +N EF A     +DFH
Sbjct: 58  KWYHLLQIPLSNRHTDLEENTEFKANLVSPVDFH 91


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/54 (20%), Positives = 27/54 (50%)
 Frame = +3

Query: 267 ELLCYFNGNLKKFSVPLKTLGSDFQKNVWMKLQEIPFGSTYTYSDITKALGRPT 428
           ++ CYF+ ++ ++ +PL++     +K +   + +      YT+  I   +  PT
Sbjct: 312 QMFCYFSQHVSEWGIPLESAPDALEKLINYTVDDAGKIGAYTHWPIEVRVCAPT 365


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,684,880
Number of Sequences: 5004
Number of extensions: 53028
Number of successful extensions: 157
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)