Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16m22
         (707 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              25   0.70 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   2.1  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   2.1  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   2.1  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   6.6  

>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 264 EELLCYFNGNLKKFSVPLKTLG 329
           E+L CYFN  L+KF+V  K  G
Sbjct: 66  EKLKCYFNCVLEKFNVMDKKNG 87


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 297 KKFSVPLKTLGSDFQKNVWM 356
           K+  V   ++GS+F KN+W+
Sbjct: 76  KRTGVETLSVGSEFIKNIWV 95


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 297 KKFSVPLKTLGSDFQKNVWM 356
           K+  V   ++GS+F KN+W+
Sbjct: 76  KRTGVETLSVGSEFIKNIWV 95


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 297 KKFSVPLKTLGSDFQKNVWM 356
           K+  V   ++GS+F KN+W+
Sbjct: 15  KRTGVETLSVGSEFIKNIWV 34


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 561 ISTNVLLNVFLECW 520
           I+  V++ VFL CW
Sbjct: 272 ITVGVIMGVFLICW 285


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,166
Number of Sequences: 438
Number of extensions: 3505
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)