Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16m20
         (408 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar...   119   2e-28
SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces...    51   8e-08
SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8 |Schizosacch...    38   6e-04
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha...    38   6e-04
SPAC2F3.17c |lsm6||U6 snRNP-associated protein Lsm6|Schizosaccha...    31   0.052
SPBC20F10.09 |lsm5||U6 snRNP-associated protein Lsm5|Schizosacch...    30   0.12 
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    26   2.6  
SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomy...    25   3.4  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    25   3.4  
SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces...    25   4.5  
SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein Smf1|Schizosac...    25   4.5  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    24   7.9  

>SPCC285.12 |lsm7||U6 snRNP-associated protein
           Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 113

 Score =  119 bits (286), Expect = 2e-28
 Identities = 60/110 (54%), Positives = 76/110 (69%)
 Frame = +3

Query: 21  EKSKGSQVTGDNKEKRRKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNT 200
           +K  G   +    E+ RKESILDLS+Y ++ I+  F GGR+  GILKG+D L+NLVLD+ 
Sbjct: 5   QKRPGPGNSSQPTERPRKESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDV 64

Query: 201 TEFLRDPDDPYKLLDDTRALGLVVCRGTSVVLICPMDGMEAIPNPFINQE 350
            E LR+P+D  KL    R LGLVV RGT++VLI PMDG E IPNPF+  E
Sbjct: 65  EEQLRNPEDG-KLTGAIRKLGLVVVRGTTLVLIAPMDGSEEIPNPFVQAE 113


>SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 77

 Score = 50.8 bits (116), Expect = 8e-08
 Identities = 28/77 (36%), Positives = 45/77 (58%)
 Frame = +3

Query: 87  DLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLLDDTRALGL 266
           DL KYL++ + V+  G R+  G+L+GYD  LN+VL+++ E         K+  +   +G 
Sbjct: 8   DLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIE--------EKVDGEKVKIGS 59

Query: 267 VVCRGTSVVLICPMDGM 317
           V  RG SV++I  +D M
Sbjct: 60  VAIRGNSVIMIETLDKM 76


>SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 94

 Score = 37.9 bits (84), Expect = 6e-04
 Identities = 21/72 (29%), Positives = 39/72 (54%)
 Frame = +3

Query: 84  LDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLLDDTRALG 263
           + L+ ++E+ ++V    GR   G LKG+D   NL+L ++ E +   D       +T  LG
Sbjct: 1   MSLADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFERIISMDQDM----ETIPLG 56

Query: 264 LVVCRGTSVVLI 299
           + + RG +V ++
Sbjct: 57  VYLLRGENVAMV 68


>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
           Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 93

 Score = 37.9 bits (84), Expect = 6e-04
 Identities = 30/80 (37%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
 Frame = +3

Query: 84  LDLSKY-LEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTE----FLRDPDDPYKLLDD 248
           LDL +  L++ + VK  G RE  G L  YD  LN+VL +  E    F  +  D  K L  
Sbjct: 11  LDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKT 70

Query: 249 TRA-LGLVVCRGTSVVLICP 305
            R    ++  RG SV+LI P
Sbjct: 71  IRKHYEMLFVRGDSVILIAP 90


>SPAC2F3.17c |lsm6||U6 snRNP-associated protein
           Lsm6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 75

 Score = 31.5 bits (68), Expect = 0.052
 Identities = 19/74 (25%), Positives = 34/74 (45%)
 Frame = +3

Query: 90  LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFLRDPDDPYKLLDDTRALGLV 269
           L+K + K + ++ + G +  GIL   D  +NL L+ T E++            T   G  
Sbjct: 9   LNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNG--------KKTNVYGDA 60

Query: 270 VCRGTSVVLICPMD 311
             RG +V+ +  +D
Sbjct: 61  FIRGNNVLYVSALD 74


>SPBC20F10.09 |lsm5||U6 snRNP-associated protein
           Lsm5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 80

 Score = 30.3 bits (65), Expect = 0.12
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +3

Query: 90  LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEF 209
           + K +  ++ V     RE AG L G+D  +N+VL + TE+
Sbjct: 11  IDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEY 50


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 88  SNIDSFLLFSLLSPVTW 38
           S +DSFL F L  P+TW
Sbjct: 272 SGLDSFLNFPLYWPITW 288


>SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 84

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = +3

Query: 150 GILKGYDPLLNLVLDNTTEFLRDPDDPYKLLDDTRALGLVVCRGTSVVLI 299
           G ++G+D  +N+VLD+  +            ++ R LG ++ +G ++ LI
Sbjct: 40  GQIRGFDEFMNIVLDDAVQ--------VDAKNNKRELGRILLKGDNITLI 81


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -3

Query: 385 KIYSYHNNYSYPSWLING 332
           +IYS++N YSY + + NG
Sbjct: 226 QIYSFNNGYSYKNSISNG 243


>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 408

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 51  DNKEKRRKESILDLSKYLEKSIRVKFAGGREAAGILKGYDPL 176
           +N  K+  + +  +++ +E  I + +    E  G+LKGYD L
Sbjct: 353 NNHRKKISQVLRKINRDIEL-ININYGTDSEWRGVLKGYDKL 393


>SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein
           Smf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 78

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 90  LSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNTTEFL 212
           L   + K + V+   G+E  G L+  D  +NL L N  E +
Sbjct: 12  LQGLIGKPVLVRLKWGQEYKGTLQSVDSYMNLQLLNAEELV 52


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 75   ESILDLSKYLEKSIRVKFAGGREAAGILKGYDPLLNLVLDNT 200
            E  +D +  L  S   K+ G  E  G+L  YD  L+ +L+ +
Sbjct: 3696 EEDVDGTMNLHLSSNFKYIGQTEIIGLLDSYDCYLSSLLETS 3737


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,560,094
Number of Sequences: 5004
Number of extensions: 29997
Number of successful extensions: 102
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)