Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16m15
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.10c |||ribosome biogenesis protein Rrp14-N|Schizosacchar...    29   0.83 
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    27   1.9  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.4  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    26   4.4  
SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|ch...    26   4.4  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   4.4  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    26   5.9  

>SPAC8C9.10c |||ribosome biogenesis protein
           Rrp14-N|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 154

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 20/97 (20%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
 Frame = +1

Query: 313 PVKLHDKIVQTEIFQKVKATLQKRHEKRQVWISMNPQMK-ADYCDEDGNKQFMGYLLEEQ 489
           P KL+ +      +++ K+TL+++ E+R++  S++  +  AD   +  +K      + + 
Sbjct: 23  PAKLYYREHTANQWKQKKSTLEEKKERRKMKFSLDGLVNDADDDSQKSSKWEQSSTMSDD 82

Query: 490 TSTTGVSEESLARIIEKFSEIKKDSSKPFNIGRMAEK 600
           T  +    ES+++I  K +   +D  +    G + +K
Sbjct: 83  TDVSDRHAESMSQIRGKLASKIQDLREKRKAGDLNQK 119


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
 Frame = +1

Query: 397 QVWISMNPQMKADYCDEDGN---KQFMGYLLEEQTSTTGVSEESLARIIEKFSEIKKDSS 567
           Q+W  ++   +A    +D N   KQF  YLL+E T   G  EE   R I      K DS 
Sbjct: 783 QIWAVVSDVYEA----QDNNTTLKQFFNYLLDESTWPEGYLEERHWRSILCKEARKHDSG 838

Query: 568 -KPFNIG 585
            K F +G
Sbjct: 839 LKLFKLG 845


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +1

Query: 421 QMKADYCDEDGNKQFMGYLLEEQTSTTGVSEESLARIIEKFSEIKKDSSKPFNI 582
           +++ D  D+D N Q     +EE+      S E    IIE+   +K+ +++P NI
Sbjct: 734 ELRGDEDDQDENDQVTK--VEEEHMEDDDSVEEFDPIIEERQRMKRKANRPANI 785


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1131

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 186  SW*VAVEMLFYNVFIYLYQNTVSLCK-TIA 100
            +W   +  L+   +IYL Q T+++CK TIA
Sbjct: 1068 AWSEYIRNLYPKAYIYLLQYTIAVCKPTIA 1097


>SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 150

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 210 LEFQFIHFSW*VAVEMLFYNVFIYLY 133
           LE   + + W   +EML+Y +++ LY
Sbjct: 63  LEHYEVPYKWIFIIEMLYYELYLTLY 88


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +1

Query: 445 EDGNKQFMGYLLEEQTSTTGVSEESLARIIEKFSEIKKDSSKPFNI 582
           EDG  Q++      Q        E LAR++ +FS I+ ++ + F +
Sbjct: 243 EDGPFQWIERSFPSQVQLANSRREILARLLTRFSMIQNNALQSFKL 288


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -3

Query: 168 EMLFYNVFIYLYQNTVSLCKTIAI 97
           ++L +++ +YLY N VSL +T A+
Sbjct: 554 DILIHSLCVYLYNNGVSLLRTRAM 577


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,861,350
Number of Sequences: 5004
Number of extensions: 61368
Number of successful extensions: 174
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)