Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16m15
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265...    29   3.5  
05_01_0207 + 1493224-1493385,1493475-1493839,1494313-1494390,149...    29   4.6  
03_06_0221 + 32458867-32459149,32460271-32460386,32460461-324608...    28   6.0  
06_01_1114 - 9179614-9180167,9180223-9180544,9181524-9181820,918...    28   8.0  
06_01_0421 - 3000486-3000595,3000909-3001148,3001659-3001722,300...    28   8.0  

>02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,
            2657523-2657649,2657731-2657812,2658172-2658196
          Length = 2621

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 2/123 (1%)
 Frame = +1

Query: 307  LQPVKLHDKIVQTEI--FQKVKATLQKRHEKRQVWISMNPQMKADYCDEDGNKQFMGYLL 480
            LQ +K H K+ + ++   QK+   +  R + R V +S   Q      +  GN++ +G   
Sbjct: 746  LQSLKGHLKVAKGDLRDLQKLVERISSRSDGR-VLVSKLIQS----FESKGNQEDLGMSE 800

Query: 481  EEQTSTTGVSEESLARIIEKFSEIKKDSSKPFNIGRMAEKFVIEKFNSKITNVSQWMTTF 660
             E  +   +++E + R++EK   +  D +K        E++V E  N +I    ++M+  
Sbjct: 801  GEHDNLRKLTQEMICRLVEKLKAMTSDIAK-------TEEYVAELCN-RIELSVKFMSQH 852

Query: 661  EAE 669
            EAE
Sbjct: 853  EAE 855


>05_01_0207 +
           1493224-1493385,1493475-1493839,1494313-1494390,
           1496134-1496157,1496213-1496654
          Length = 356

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 22/96 (22%), Positives = 40/96 (41%)
 Frame = +1

Query: 148 YIIKQHFYSYLPRKMDKLKFEFMVKASEDVKTNTICITTITDFDGRTFTIPDKLQPVKLH 327
           +II++  ++   R  D L +   +   E +   T C   +T  DGR  T+P K       
Sbjct: 252 FIIEERSHARFKRDKDDLIYTHRISLVEAL---TGCTVQLTTLDGRNLTVPVKSVINPTS 308

Query: 328 DKIVQTEIFQKVKATLQKRHEKRQVWISMNPQMKAD 435
           +++V+ E     K   +K   K +  I     + +D
Sbjct: 309 EEVVKGEGMPITKEPSKKGDLKIRFQIKFPTNLTSD 344


>03_06_0221 +
           32458867-32459149,32460271-32460386,32460461-32460807,
           32461231-32461411,32461507-32461629,32461828-32462115,
           32462536-32462688,32463068-32463169,32463260-32463313,
           32463518-32463624,32463867-32463927,32464019-32464150,
           32464245-32464382,32464459-32464539,32464635-32464715,
           32465133-32465213,32465300-32465413
          Length = 813

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +1

Query: 442 DEDGNKQFMGYLLEEQTSTTGVSEESLARIIEKFSEIKKDS 564
           DE+ +K+ + +LLE + S   + EES A+  E FS   K+S
Sbjct: 398 DEEKDKELVPFLLEFKASLDRILEESFAK-NEAFSNTIKES 437


>06_01_1114 -
           9179614-9180167,9180223-9180544,9181524-9181820,
           9181991-9182878,9182896-9182941,9182964-9183350,
           9183648-9183985
          Length = 943

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +1

Query: 313 PVKLHDKIVQTEIFQKVKATLQKRHEKRQ--VWISMNPQMKADYCDEDGNKQFMGYLLEE 486
           PVK+ D  +  +   KV+A   +    R          ++ A++  E+GN      LLE+
Sbjct: 540 PVKIWDFFIPVDFMNKVRAEPAEYSRGRSGATQDGQPGEIHAEF-PEEGNNDAQEPLLED 598

Query: 487 QTSTTGVSEESLA 525
              TT  S+E+ A
Sbjct: 599 AGKTTNTSQEARA 611


>06_01_0421 - 3000486-3000595,3000909-3001148,3001659-3001722,
            3001969-3002274,3002365-3002579,3003047-3003341,
            3003487-3003651,3003745-3004341,3004855-3004941,
            3005022-3005342,3006218-3008242
          Length = 1474

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = -1

Query: 638  TLVILLLNFSITNFSAILPILNGFDESFFISENFSMILARDSSDTPVVEV 489
            ++V+L +  S + FS +L  L     SFF S     +L+R SSD  +V++
Sbjct: 971  SIVVLGMQTSRSLFSQLLNSLFRAPMSFFDSTPLGRVLSRVSSDLSIVDL 1020


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,506,718
Number of Sequences: 37544
Number of extensions: 319030
Number of successful extensions: 698
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)