Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16m13
(415 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 28 0.66
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 28 0.66
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 28 0.66
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 28 0.66
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 27 0.87
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 27 1.5
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 27 1.5
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 27 1.5
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 27 1.5
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 27 1.5
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 27 1.5
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos... 25 4.7
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 25 6.1
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po... 24 8.1
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 0.66
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = +1
Query: 100 FKVNNFNFG--SLNQGNKANNERNLFGKKS*LAILEYNYIKYLVNLR 234
F++ N N G SL++ N N RNL +K+ ++ +EY+ K+L + R
Sbjct: 204 FQLQNKNLGKESLSKKNNTTNSRNL--RKTNVSRIEYSSNKFLNHTR 248
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 0.66
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = +1
Query: 100 FKVNNFNFG--SLNQGNKANNERNLFGKKS*LAILEYNYIKYLVNLR 234
F++ N N G SL++ N N RNL +K+ ++ +EY+ K+L + R
Sbjct: 204 FQLQNKNLGKESLSKKNNTTNSRNL--RKTNVSRIEYSSNKFLNHTR 248
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 0.66
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = +1
Query: 100 FKVNNFNFG--SLNQGNKANNERNLFGKKS*LAILEYNYIKYLVNLR 234
F++ N N G SL++ N N RNL +K+ ++ +EY+ K+L + R
Sbjct: 204 FQLQNKNLGKESLSKKNNTTNSRNL--RKTNVSRIEYSSNKFLNHTR 248
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.9 bits (59), Expect = 0.66
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = +1
Query: 100 FKVNNFNFG--SLNQGNKANNERNLFGKKS*LAILEYNYIKYLVNLR 234
F++ N N G SL++ N N RNL +K+ ++ +EY+ K+L + R
Sbjct: 204 FQLQNKNLGKESLSKKNNTTNSRNL--RKTNVSRIEYSSNKFLNHTR 248
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 27.5 bits (58), Expect = 0.87
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +1
Query: 109 NNFNFGSLNQGNKANNERNLFGKKS*LAILEYNYIKYLVNLRY 237
++F+F S + N+E+ F S + +L +Y+KY + +Y
Sbjct: 819 HSFSFDSTLASSSDNDEQRDFASNSSIVLLGLHYLKYFGSNKY 861
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 1.5
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +1
Query: 100 FKVNNFNFG--SLNQGNKANNERNLFGKKS*LAILEYNYIKYLVNLR 234
F+ N N G SL++ N N RNL +K+ ++ +EY+ K+L + R
Sbjct: 204 FQPQNKNLGKESLSKKNNTTNSRNL--RKTNVSRIEYSSNKFLNHTR 248
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 1.5
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +1
Query: 100 FKVNNFNFG--SLNQGNKANNERNLFGKKS*LAILEYNYIKYLVNLR 234
F+ N N G SL++ N N RNL +K+ ++ +EY+ K+L + R
Sbjct: 204 FQPQNKNLGKESLSKKNNTTNSRNL--RKTNVSRIEYSSNKFLNHTR 248
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 1.5
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +1
Query: 100 FKVNNFNFG--SLNQGNKANNERNLFGKKS*LAILEYNYIKYLVNLR 234
F+ N N G SL++ N N RNL +K+ ++ +EY+ K+L + R
Sbjct: 204 FQPQNKNLGKESLSKKNNTTNSRNL--RKTNVSRIEYSSNKFLNHTR 248
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 1.5
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +1
Query: 100 FKVNNFNFG--SLNQGNKANNERNLFGKKS*LAILEYNYIKYLVNLR 234
F+ N N G SL++ N N RNL +K+ ++ +EY+ K+L + R
Sbjct: 204 FQPQNKNLGKESLSKKNNTTNSRNL--RKTNVSRIEYSSNKFLNHTR 248
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 1.5
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +1
Query: 100 FKVNNFNFG--SLNQGNKANNERNLFGKKS*LAILEYNYIKYLVNLR 234
F+ N N G SL++ N N RNL +K+ ++ +EY+ K+L + R
Sbjct: 204 FQPQNKNLGKESLSKKNNTTNSRNL--RKTNVSRIEYSSNKFLNHTR 248
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 1.5
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +1
Query: 100 FKVNNFNFG--SLNQGNKANNERNLFGKKS*LAILEYNYIKYLVNLR 234
F+ N N G SL++ N N RNL +K+ ++ +EY+ K+L + R
Sbjct: 204 FQPQNKNLGKESLSKKNNTTNSRNL--RKTNVSRIEYSSNKFLNHTR 248
>SPCC1322.12c |bub1||serine/threonine protein kinase
Bub1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1044
Score = 25.0 bits (52), Expect = 4.7
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 85 VYI*AFKVNNFNFGSLNQGNKANNERNLFGKK 180
VY+ K+ N G ++QG NNE LF K
Sbjct: 732 VYLVKSKIETEN-GDVSQGGAENNESKLFALK 762
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 24.6 bits (51), Expect = 6.1
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -1
Query: 238 SILDLLGTLYNYIQEWLI--MIFFRINSFHCLP 146
S+LD L T YN +Q + ++ +N F LP
Sbjct: 88 SVLDALSTRYNQLQIYTYSGIVLIAVNPFQRLP 120
>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 674
Score = 24.2 bits (50), Expect = 8.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 103 KVNNFNFGSLNQGNKANNERNLFGK 177
K N F+F L ++N R++FGK
Sbjct: 105 KNNIFSFDELELEERSNRPRSIFGK 129
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,366,844
Number of Sequences: 5004
Number of extensions: 24715
Number of successful extensions: 65
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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