Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16m13
         (415 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   5.5  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   7.3  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   7.3  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    20   9.6  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    20   9.6  

>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 109 NNFNFGSLNQGNKANNERNLFGK 177
           NN+N  + N  N  NN  N + K
Sbjct: 94  NNYNNNNYNNYNYNNNNYNNYKK 116


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 100 FKVNNFNFGSLNQGNKANNERNLFGKK 180
           +K +N+N  + N  N  NN  N   KK
Sbjct: 89  YKYSNYNNYNNNYNNNYNNNYNNNYKK 115


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 100 FKVNNFNFGSLNQGNKANNERNLFGKK 180
           +K +N+N  + N  N  NN  N   KK
Sbjct: 89  YKYSNYNNYNNNYNNNYNNNYNNNYKK 115


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 323 YVKNVKNREIKKNHLL 370
           Y+  VKN++    HLL
Sbjct: 325 YIPKVKNKKAGSKHLL 340


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -1

Query: 334 IFYIYFPRCCIVFL 293
           +F+ Y P C IV +
Sbjct: 248 LFHTYIPTCLIVIM 261


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,038
Number of Sequences: 438
Number of extensions: 1794
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)