Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16m12
         (688 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0058 - 478708-478731,478802-478834,478953-479100,479423-48...    30   2.0  
06_03_0953 - 26277946-26278800,26280177-26280676,26280735-26280849     29   2.6  

>03_01_0058 -
           478708-478731,478802-478834,478953-479100,479423-480072
          Length = 284

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/25 (56%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = +1

Query: 316 PHSL-PGHEHGPKAFRRCQVGVARV 387
           PH L PG  H P AF RC    ARV
Sbjct: 68  PHKLQPGVRHPPAAFLRCYAATARV 92


>06_03_0953 - 26277946-26278800,26280177-26280676,26280735-26280849
          Length = 489

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/39 (41%), Positives = 17/39 (43%)
 Frame = +1

Query: 568 PPAPGRAEHGLHPRPHGLHARGCTAGKWCGRARQRGTHA 684
           PP P     G+HP PH    R    G W G  R R  HA
Sbjct: 121 PPPPPEMPVGMHPHPHEPPPRFQELGAWEG-FRPRRQHA 158


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,995,627
Number of Sequences: 37544
Number of extensions: 233842
Number of successful extensions: 837
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)