Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16m12
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084156-1|AAK68491.2|  466|Caenorhabditis elegans Hypothetical ...    88   5e-18
AC084156-2|AAK68490.2|  243|Caenorhabditis elegans Hypothetical ...    73   2e-13
U13875-10|AAA21159.1|  332|Caenorhabditis elegans F-box synaptic...    46   3e-05
Z70271-5|CAA94233.2|  443|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AF031477-1|AAC15586.1|  443|Caenorhabditis elegans delta6-fatty-...    29   4.1  

>AC084156-1|AAK68491.2|  466|Caenorhabditis elegans Hypothetical
           protein Y46E12BL.4 protein.
          Length = 466

 Score = 88.2 bits (209), Expect = 5e-18
 Identities = 36/46 (78%), Positives = 41/46 (89%)
 Frame = +2

Query: 494 QLKHAWNPNDRSLNIFVKEEDALTFHRHPVAQSTDCIRGRTGYTRG 631
           Q +H+WNP DRSLNIFVK+ED  TFHRHPVAQSTDCIRG+ GY+RG
Sbjct: 111 QEQHSWNPEDRSLNIFVKDEDKFTFHRHPVAQSTDCIRGKMGYSRG 156


>AC084156-2|AAK68490.2|  243|Caenorhabditis elegans Hypothetical
           protein Y46E12BL.3 protein.
          Length = 243

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 29/46 (63%), Positives = 37/46 (80%)
 Frame = +2

Query: 494 QLKHAWNPNDRSLNIFVKEEDALTFHRHPVAQSTDCIRGRTGYTRG 631
           Q +H+WNP+DRS NI VK++D LT +RHPV   TDCIRG+ GY+RG
Sbjct: 22  QEQHSWNPDDRSPNIIVKDQDKLTLYRHPVPNCTDCIRGKMGYSRG 67


>U13875-10|AAA21159.1|  332|Caenorhabditis elegans F-box synaptic
           protein protein 1 protein.
          Length = 332

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 20/42 (47%), Positives = 29/42 (69%)
 Frame = +2

Query: 506 AWNPNDRSLNIFVKEEDALTFHRHPVAQSTDCIRGRTGYTRG 631
           AWN +D S N +++  +  T HR PVAQSTD +RG+ G ++G
Sbjct: 159 AWNTSDISRNNYIRT-NGFTVHRQPVAQSTDGVRGKRGISKG 199


>Z70271-5|CAA94233.2|  443|Caenorhabditis elegans Hypothetical
           protein W08D2.4 protein.
          Length = 443

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -3

Query: 179 LSIVNHSTYHHNTIKKYLLIFPLNNRTINTFEVT*ILCYKN 57
           L I +  T++HN++ KY    P N+R +N F    IL  +N
Sbjct: 330 LLIAHVVTFNHNSVDKY----PANSRILNNFAALQILTTRN 366


>AF031477-1|AAC15586.1|  443|Caenorhabditis elegans
           delta6-fatty-acid-desaturase protein.
          Length = 443

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -3

Query: 179 LSIVNHSTYHHNTIKKYLLIFPLNNRTINTFEVT*ILCYKN 57
           L I +  T++HN++ KY    P N+R +N F    IL  +N
Sbjct: 330 LLIAHVVTFNHNSVDKY----PANSRILNNFAALQILTTRN 366


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,069,643
Number of Sequences: 27780
Number of extensions: 181812
Number of successful extensions: 478
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)