Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16m09
(706 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa... 30 0.37
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 29 0.49
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy... 29 0.86
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po... 27 2.0
SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|c... 27 2.6
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 2.6
SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|c... 27 2.6
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom... 27 2.6
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro... 26 4.6
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha... 26 6.0
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy... 26 6.0
SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ... 25 8.0
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb... 25 8.0
>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1029
Score = 29.9 bits (64), Expect = 0.37
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +3
Query: 168 WLLETLYPTTGESVPSRIKIHQAIDHFSDSPPSGRSHSFHTH-HYVSNH 311
++L+ LY +GESV SRI++ +D D + S ++++H V+ H
Sbjct: 335 YILDALYVFSGESVNSRIQVVSDVDDDEDD-ENAFSQNYYSHLQMVAKH 382
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 29.5 bits (63), Expect = 0.49
Identities = 17/64 (26%), Positives = 27/64 (42%)
Frame = +2
Query: 2 IFSWSIEEAARVCQKFFIFNISHREFL*YTTNLEGTCLCELNMRNILMVCAICLVLAVGN 181
+F ++E + +VC F I R T + E L + + V C+VL G
Sbjct: 270 VFCINVEHSLKVCNAFRKLGIDARALFGETNDSERETLIQDFRKKKFPVLVNCMVLTEGT 329
Query: 182 ALPN 193
+PN
Sbjct: 330 DIPN 333
>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 794
Score = 28.7 bits (61), Expect = 0.86
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 264 SGRSHSFHTHHYVSNHSDHFHHIHRG 341
+G H H HHY++ H +H H G
Sbjct: 739 NGGHHHHHHHHYITGHVYGGYHKHSG 764
>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 330
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = +3
Query: 435 VLTGSRYLISHRPDSPTN-SSPRCRTIRISSARSPEPRL 548
VL S YL+SH P N S RC + R +P L
Sbjct: 240 VLASSDYLVSHEPKDENNYSHTRCTHYFLEPIRWMQPEL 278
>SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 357
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 3 YLVGLSKRLPVCVRSSLYSILVIVNFYSTQLI 98
++V +S+ LP CV ++S+ +F+S LI
Sbjct: 323 FMVTVSRFLPTCVIDGIFSLFGKFHFFSCSLI 354
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/40 (25%), Positives = 19/40 (47%)
Frame = +3
Query: 210 PSRIKIHQAIDHFSDSPPSGRSHSFHTHHYVSNHSDHFHH 329
P+ + + FS P G S+ + H+++N+ HH
Sbjct: 371 PTHVSAATGSNTFSPDFPYGNSYGNGSSHFIANYGGSVHH 410
>SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|chr
1|||Manual
Length = 320
Score = 27.1 bits (57), Expect = 2.6
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +1
Query: 97 FGRYMLV*IKYEEYINGLCHLF---GVGCWKRSTQQQGSRCLRV 219
+ + L+ I Y I GL ++ G GC RSTQ + CLR+
Sbjct: 46 YDSFSLITITYRSGIEGLENMTSDTGWGCMIRSTQTLLANCLRI 89
>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 597
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +3
Query: 162 WCWLLETLYPTTGESVPSRIKIHQAIDHFSDSPPSGRSHSFHTHHYVSNHSD 317
+C L E L PT+ E I++H+ I SD S H +S++ +
Sbjct: 293 YCGLDEVLTPTSLEEDGKTIELHEKIASASDIGASEDEEDVDMHESISDNEN 344
>SPAC23H4.10c |thi4||thiamine-phosphate
dipyrophosphorylase/hydroxyethylthiazole kinase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 518
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -1
Query: 628 IARVLVHIGHVRIRGINGSNLVTETRASRGSGERAELIRIV 506
++++ +G V I G+N SN+ S +G+R + I +V
Sbjct: 159 VSKMHCQLGTVAIAGLNSSNIQRVIYLSEANGKRIDGIALV 199
>SPCC1753.02c |git3||G-protein coupled receptor
Git3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 25.8 bits (54), Expect = 6.0
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +2
Query: 254 FTPIRTKSFFPYTPLRF 304
F ++T+ + PYTP+RF
Sbjct: 169 FVNLQTRCYLPYTPVRF 185
>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 286
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/39 (30%), Positives = 16/39 (41%)
Frame = +3
Query: 243 HFSDSPPSGRSHSFHTHHYVSNHSDHFHHIHRGRSARTS 359
H S S H+ H+ +H H HH H S +S
Sbjct: 7 HKGGSDDSTHHHTHDYDHHNHDHHGHDHHSHDSSSNSSS 45
>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 450
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -3
Query: 248 KMVYCLMNLDTRRHRLPCCWVERFQQPTPNKWHKPLIYSSYL 123
K V+CL + R CC +E +Q TP+ + P + Y+
Sbjct: 388 KYVHCLNSTLCATERALCCILENYQ--TPDGVNVPKVLQPYM 427
>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 25.4 bits (53), Expect = 8.0
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 8/73 (10%)
Frame = +3
Query: 171 LLETLYPTTGESVPSRIKIHQAID-HFSDSPPSGRS--HSFHT-----HHYVSNHSDHFH 326
LL+ P +S S H++ + + S SG + H+ H HH +H H H
Sbjct: 247 LLDVALPVLPKSSDSSETSHESSNSNLKKSSESGSTNHHNNHESDKDLHHEGHHHHHHHH 306
Query: 327 HIHRGRSARTSRP 365
H H S P
Sbjct: 307 HHHHSHDDDPSSP 319
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,923,804
Number of Sequences: 5004
Number of extensions: 63392
Number of successful extensions: 201
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -