Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16m06
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    36   0.006
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    29   0.84 
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy...    27   3.4  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    27   3.4  
SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.5  
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos...    26   4.5  
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    26   5.9  
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...    26   5.9  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    25   7.8  

>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 35.9 bits (79), Expect = 0.006
 Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
 Frame = +3

Query: 414 SMWHQVLEIGLDVANISASHPEGINLIGYSQGGLVARG--IVETFSNVSVSTFISLSSPQ 587
           S++ Q  +I  +  N +   P  + L+G+S GG+VA+    ++ + + SV+T I+L++P 
Sbjct: 235 SLYRQNRKISSEYDNEAFPPPTSVILLGHSMGGIVAQATFTMKNYVDGSVNTLITLATPH 294

Query: 588 A 590
           A
Sbjct: 295 A 295


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = -1

Query: 177 LKEHCCFLVFKLFSKLV-YIK-NYLESSKYIFNFLFIMNYSL 58
           LKE+C F ++ LF  L+ Y+  +Y E+S  +F FL  +  SL
Sbjct: 320 LKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSL 361


>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 174 KEHCCFLVFKLFSKLVYI 121
           K  CCFL+F L + L+Y+
Sbjct: 11  KVGCCFLIFGLLNNLLYV 28


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -1

Query: 405 WTSSRTCSHCTQLFRDV 355
           W SS    HCT LFRDV
Sbjct: 349 WLSSLEQYHCTYLFRDV 365


>SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 225

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
 Frame = +3

Query: 279 KPVVLMHGIMTGSGSME---IIKHRIEEKHPGTVVYNVNRFESWSSLESMWHQVLEIGLD 449
           K  VL H      GS++   II    +    G  VY ++     S+L S  H  +   L 
Sbjct: 28  KIAVLAHPYAFLGGSVDDINIIALSKKINSKGFTVYVLDATTRRSALLSGKHDTMIFTLF 87

Query: 450 VANI-SASHPEGINLIGYSQGGLVA 521
           V  I S +HPE + L GYS G  ++
Sbjct: 88  VKYITSLNHPEYLLLGGYSYGARIS 112


>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = +3

Query: 459 ISASHPEGINLIGYSQGGLVARGI--VETFSNVSVSTFISLS 578
           +S +  + I+L+G+SQG ++A     ++T    SV  FI+L+
Sbjct: 200 LSVNSFDSISLVGFSQGAILAFAALSIDTELRNSVRAFIALA 241


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 681 ADQLSSRTTHRQFL*PSPETPS 616
           A +L   T HRQ   P+P TPS
Sbjct: 127 ATRLLQSTPHRQLFPPTPSTPS 148


>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
 Frame = +3

Query: 297 HGIMTGSGSMEIIKHRIEEKHPG--TVVYNVNR--FESWSSLESMWHQVLEIGLDVA 455
           HGIM G G  +       +   G  T+ Y +      +W  +E +WH      L VA
Sbjct: 41  HGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVA 97


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 7/36 (19%)
 Frame = -2

Query: 440 NFQNLVPHTFQAGPALEPVH-------IVHNCSGMF 354
           N  +LVP  F AGP +  +H       +V +CSG F
Sbjct: 245 NLSSLVPIPFPAGPTIIRMHPKLSTTAVVCSCSGQF 280


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,704,958
Number of Sequences: 5004
Number of extensions: 53615
Number of successful extensions: 151
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)