Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16m06
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0008 + 84955-85048,85165-85225,85375-85426,85554-85661,856...    40   0.002
02_01_0234 + 1559899-1559969,1561281-1561333,1561673-1561787,156...    36   0.031
05_03_0557 - 15441039-15442730                                         30   2.0  
05_05_0079 + 22239238-22239395,22240837-22240877,22240955-222410...    29   4.7  
03_06_0509 - 34420496-34420502,34420709-34420716,34421006-344210...    28   6.2  

>03_01_0008 +
           84955-85048,85165-85225,85375-85426,85554-85661,
           85662-85715,86140-86190,86348-86410,87048-87113,
           87190-87228,87493-87615,88251-88343,88437-88661
          Length = 342

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
 Frame = +3

Query: 480 GINLIGYSQGGLVARGIVETFSN-VSVSTFISLSSPQAGQ-----YGAGFLHLVFPGLVK 641
           G N++G SQG L+ R +VE   +   V  FISL  P AG       G+G   ++   L+K
Sbjct: 115 GYNIVGLSQGNLIGRAVVEFCDDGPPVKNFISLGGPHAGTASVPLCGSGIFCILADSLIK 174

Query: 642 ETVY 653
             +Y
Sbjct: 175 MEIY 178


>02_01_0234 +
           1559899-1559969,1561281-1561333,1561673-1561787,
           1562073-1562195,1562558-1562729,1562815-1563000
          Length = 239

 Score = 35.9 bits (79), Expect = 0.031
 Identities = 16/36 (44%), Positives = 24/36 (66%)
 Frame = +3

Query: 477 EGINLIGYSQGGLVARGIVETFSNVSVSTFISLSSP 584
           EGI+LIG+S GG +AR  +E F    +S  ++L +P
Sbjct: 43  EGISLIGHSAGGWLARVYMEEFDASDISLLLTLGTP 78


>05_03_0557 - 15441039-15442730
          Length = 563

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 438 IGLDVANISASHPEGINLIGYSQGGLVARGIVETFSNVSVSTFIS 572
           IGL +A I     EG+ L+G+S   LV  G        SV+  ++
Sbjct: 202 IGLFLAFIGLQSSEGVGLVGFSSSTLVTLGACPASQRASVAPVVT 246


>05_05_0079 +
           22239238-22239395,22240837-22240877,22240955-22241033,
           22241570-22241656,22241749-22241837,22241933-22242004,
           22242094-22242186,22242339-22242427
          Length = 235

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 198 CSLFLITMNLVKALLFNVLSLSIGFAYKPVVLMHGIMTG 314
           C+L+    N    ++F    L IGF +KPV ++   MTG
Sbjct: 49  CNLYYYRTNYFILIMF---ILGIGFIWKPVAILAAFMTG 84


>03_06_0509 -
           34420496-34420502,34420709-34420716,34421006-34421071,
           34421634-34421756
          Length = 67

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +3

Query: 363 GTVVYNVNRFESWSSLESMWHQVLEIGLDVAN 458
           GT   NV R  SW S +S W   L IG +VA+
Sbjct: 24  GTFSVNVYRGLSWHSEQSKWFIKLFIGFNVAD 55


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,263,226
Number of Sequences: 37544
Number of extensions: 309207
Number of successful extensions: 780
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)