Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16m01
         (608 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0283 + 6819086-6820270                                           34   0.10 
02_05_0184 + 26543156-26544019                                         31   0.71 
05_07_0288 + 29001228-29001399,29001493-29001723,29001817-290019...    29   2.2  
08_01_0680 - 5958066-5960253,5960707-5961503                           29   2.9  
05_05_0165 + 22851863-22852566,22852811-22852964,22853112-228532...    28   5.0  
04_03_0775 + 19462030-19462500,19462674-19462883                       28   6.7  
03_02_0576 - 9587698-9588636                                           28   6.7  
04_01_0175 - 1972361-1972429,1973185-1973334,1974956-1975105,197...    27   8.8  

>09_02_0283 + 6819086-6820270
          Length = 394

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 22/55 (40%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = -2

Query: 205 ACRLRLLDCRERNASFVTVSGGRWTHCGFAPNLYHSRTLVAL--XSTRTTHXDVY 47
           ACRL L D  + +A  V   GG WTHCG  P         A    ST  T   VY
Sbjct: 158 ACRLALGDGEDTSAVEVHERGG-WTHCGAVPTALRESAAAAATWLSTAATDQRVY 211


>02_05_0184 + 26543156-26544019
          Length = 287

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 22/76 (28%), Positives = 37/76 (48%)
 Frame = +2

Query: 107 QIRSESAMSPAPPAHCNKTGVPFSAVKQSQATSGGKCTYSEMERDRIGLWGSGDGQPTSG 286
           Q++ + + SPAPP  C   G    A  ++ A +G      E E    G  G+G+G+   G
Sbjct: 36  QLKRKRSTSPAPPPGCG-GGQGQEAAVETDADAGAA---GEEESSSCGGAGAGEGERKRG 91

Query: 287 LSGLDHLKHPGLNKRN 334
            +G  H  + G+ +R+
Sbjct: 92  DAG-RHPSYRGVRRRS 106


>05_07_0288 +
           29001228-29001399,29001493-29001723,29001817-29001914,
           29002687-29002873,29003068-29003198,29003282-29003908
          Length = 481

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 229 FAIRTLPSACRLRLLDCRERNASFVTVSGGRWTHCGF 119
           F +     A RL +    +  A+FV  S G+W H GF
Sbjct: 29  FDVEAASGARRLGIKPAADAGAAFVLESKGKWWHAGF 65


>08_01_0680 - 5958066-5960253,5960707-5961503
          Length = 994

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 212 KCTYSEMERDRIGLWGSGDGQPTSGLSGLDHLKHPGL 322
           K  Y E  R+ IG WGSG      G+  + HL +  L
Sbjct: 380 KKEYWESIRNSIGTWGSGTNPTLEGMRQILHLSYKDL 416


>05_05_0165 +
           22851863-22852566,22852811-22852964,22853112-22853261,
           22853769-22853930,22854070-22854242,22854330-22854396,
           22854556-22854722,22855216-22855374,22856187-22856276,
           22856392-22856483,22856587-22856681,22857328-22857405,
           22858364-22858459,22859132-22859206,22859290-22859381,
           22859462-22859624,22859734-22859794,22860016-22860116,
           22860567-22860614
          Length = 908

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -3

Query: 327 LLRPGCLRWSRPERPL--VGCPSPEPHNPIRSRSIS 226
           L  PGC R  R  R L  +  PSP P +  RS+S+S
Sbjct: 23  LRSPGCRRRRRRGRVLSALSSPSPSPSSASRSQSVS 58


>04_03_0775 + 19462030-19462500,19462674-19462883
          Length = 226

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +2

Query: 62  SCPCRXQGDQCPAVVQIRSESAMSPAPPAHC--NKTGV 169
           SCPC+ + +    +  + +  A S  PP  C  N+ GV
Sbjct: 172 SCPCKGEEETLEELTTVAAAPASSQIPPTICKSNRVGV 209


>03_02_0576 - 9587698-9588636
          Length = 312

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/48 (27%), Positives = 18/48 (37%)
 Frame = -3

Query: 315 GCLRWSRPERPLVGCPSPEPHNPIRSRSISLYVHFPPLVACDCLTAEN 172
           G ++W  P  P      P P     +R  S     PPL  C    +E+
Sbjct: 226 GVIKWRPPPAPAAAAARPPPPPAFPTRRSSSAASDPPLKRCSSARSES 273


>04_01_0175 -
           1972361-1972429,1973185-1973334,1974956-1975105,
           1975370-1975417,1975717-1975793,1975897-1975999,
           1977103-1977233,1978793-1978970,1980656-1980676,
           1981233-1981290,1981381-1981444,1982261-1982431,
           1982526-1982637,1982779-1983021,1983783-1983964,
           1984785-1984920
          Length = 630

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = +2

Query: 38  KVFVYIRMSCPCRXQGDQCPAVVQIRSESAMSPAPPAHCNKTGVPF 175
           K FVY+  +CP      QC AVV        +    A C  T VPF
Sbjct: 471 KDFVYLLDNCPHDWLFLQCKAVVHHGGAGTTAAGLKAACPTTIVPF 516


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,464,512
Number of Sequences: 37544
Number of extensions: 315473
Number of successful extensions: 794
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)