Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16m01
         (608 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC043183-1|AAH43183.1| 1284|Homo sapiens collagen, type XX, alph...    29   9.7  
BC013658-1|AAH13658.1|  278|Homo sapiens COL20A1 protein protein.      29   9.7  
AL020998-1|CAI22621.2| 1220|Homo sapiens novel protein protein.        29   9.7  
AB040943-1|BAA96034.1| 1140|Homo sapiens KIAA1510 protein protein.     29   9.7  

>BC043183-1|AAH43183.1| 1284|Homo sapiens collagen, type XX, alpha 1
            protein.
          Length = 1284

 Score = 29.5 bits (63), Expect = 9.7
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 68   PCRXQGDQCPAVVQIRSESAMSPAPPAHCNKTGVP 172
            P    G+ CPA V   S S+ +P PP      G+P
Sbjct: 1049 PASRDGETCPAFVSACSCSSETPGPPGPQGPPGLP 1083


>BC013658-1|AAH13658.1|  278|Homo sapiens COL20A1 protein protein.
          Length = 278

 Score = 29.5 bits (63), Expect = 9.7
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 68  PCRXQGDQCPAVVQIRSESAMSPAPPAHCNKTGVP 172
           P    G+ CPA V   S S+ +P PP      G+P
Sbjct: 37  PASRDGETCPAFVSACSCSSETPGPPGPQGPPGLP 71


>AL020998-1|CAI22621.2| 1220|Homo sapiens novel protein protein.
          Length = 1220

 Score = 29.5 bits (63), Expect = 9.7
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
 Frame = -2

Query: 226 AIRTL-PSACRLRLLD-CRERNASFVTVSGGRWTHC--GFAPNLYHSRTLVALXSTRTTH 59
           A+R L P+ C   +   C +   +    + G+  HC   +AP  ++   L  L +T  ++
Sbjct: 158 AVRVLLPAVCAPTVPQFCTKSTGTSNQQAQGKDRHCFGAWAPGSWNKLCLATLLNTEVSN 217

Query: 58  XDVYENFSFP-EXRGPC 11
              YE F+F  E RGPC
Sbjct: 218 PMEYE-FNFQLEIRGPC 233


>AB040943-1|BAA96034.1| 1140|Homo sapiens KIAA1510 protein protein.
          Length = 1140

 Score = 29.5 bits (63), Expect = 9.7
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 68   PCRXQGDQCPAVVQIRSESAMSPAPPAHCNKTGVP 172
            P    G+ CPA V   S S+ +P PP      G+P
Sbjct: 899  PASRDGETCPAFVSACSCSSETPGPPGPQGPPGLP 933


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,799,972
Number of Sequences: 237096
Number of extensions: 1676634
Number of successful extensions: 3749
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3749
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6466646650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)