Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16m01
         (608 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82270-1|CAB63203.1|  914|Caenorhabditis elegans Hypothetical pr...    31   0.85 
AL110499-2|CAB57913.1|  297|Caenorhabditis elegans Hypothetical ...    29   2.0  
AL110499-1|CAB57912.1|  325|Caenorhabditis elegans Hypothetical ...    29   2.0  
U64851-1|AAC47990.2|  186|Caenorhabditis elegans Ground-like (gr...    29   3.4  

>Z82270-1|CAB63203.1|  914|Caenorhabditis elegans Hypothetical
           protein F53H2.1 protein.
          Length = 914

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 133 THCGFAPNLYHSRTLVALXSTRTTHXDVYENFSFPEXR 20
           T  GF P+L +S T +       ++ D YEN  FP+ R
Sbjct: 865 TFKGFTPSLIYSTTDLRRICKENSYSDNYENVQFPQIR 902


>AL110499-2|CAB57913.1|  297|Caenorhabditis elegans Hypothetical
           protein Y62F5A.1b protein.
          Length = 297

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +2

Query: 110 IRSESAMSPAPPAHCNKTGVPFS-AVKQSQATSGGKCTYSEMERDRIGLWGSGDGQPTSG 286
           IRS+  M+PAPP+    T  P S     SQ  SG +  Y   +  R  L G   GQP + 
Sbjct: 209 IRSQRTMAPAPPSSAPMTTAPSSTGPSSSQPISGNQPEYQGSQL-RQQLSG---GQPQTS 264

Query: 287 LSGLDHLKH 313
            + L    H
Sbjct: 265 QAHLPMYSH 273


>AL110499-1|CAB57912.1|  325|Caenorhabditis elegans Hypothetical
           protein Y62F5A.1a protein.
          Length = 325

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +2

Query: 110 IRSESAMSPAPPAHCNKTGVPFS-AVKQSQATSGGKCTYSEMERDRIGLWGSGDGQPTSG 286
           IRS+  M+PAPP+    T  P S     SQ  SG +  Y   +  R  L G   GQP + 
Sbjct: 209 IRSQRTMAPAPPSSAPMTTAPSSTGPSSSQPISGNQPEYQGSQL-RQQLSG---GQPQTS 264

Query: 287 LSGLDHLKH 313
            + L    H
Sbjct: 265 QAHLPMYSH 273


>U64851-1|AAC47990.2|  186|Caenorhabditis elegans Ground-like (grd
           related) protein12 protein.
          Length = 186

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 19/77 (24%), Positives = 29/77 (37%)
 Frame = +2

Query: 65  CPCRXQGDQCPAVVQIRSESAMSPAPPAHCNKTGVPFSAVKQSQATSGGKCTYSEMERDR 244
           C C      CP    +   +   P+PPA CN  G      ++   T     TY   + ++
Sbjct: 31  CSCTPPPSTCPTTC-LPIMTCTPPSPPACCNTCGTCNGKRRRRHLTMLSNATY-VADHEK 88

Query: 245 IGLWGSGDGQPTSGLSG 295
           +      D Q T+  SG
Sbjct: 89  VNRVKRQDDQETTVTSG 105


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,264,001
Number of Sequences: 27780
Number of extensions: 264040
Number of successful extensions: 646
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)