Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16m01
         (608 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   1.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.1  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   9.4  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
 Frame = -3

Query: 285 PLVGCPSPEPHNPIR-----SRSISLYVH 214
           PL+   +PE H+PIR     SRS+ L  H
Sbjct: 71  PLLRFENPETHHPIRHGRRQSRSMDLNAH 99


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 149 HCNKTGVPFSAVKQSQATSGGKCTYSEMERDR 244
           HC   GVP   +   +AT      Y E+ R+R
Sbjct: 730 HCQAQGVPTPTIVWKKATGSKSGEYEEL-RER 760


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 149 HCNKTGVPFSAVKQSQATSGGKCTYSEMERDR 244
           HC   GVP   +   +AT      Y E+ R+R
Sbjct: 726 HCQAQGVPTPTIVWKKATGSKSGEYEEL-RER 756


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = -3

Query: 318 PGCLRWSRPERPLV 277
           P   +W  P RP+V
Sbjct: 837 PNLTKWGNPNRPIV 850


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +1

Query: 361 DGI*SLVNHEDGTNAKITLGC 423
           DG+  +V H+ G+ A+    C
Sbjct: 175 DGVNDVVQHQSGSEAEAEFVC 195


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,686
Number of Sequences: 438
Number of extensions: 3921
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)