Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16l18
         (161 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual       23   4.1  
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    23   5.4  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    23   5.4  
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    22   9.5  

>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 120 KYCTEVYNYIKTS-K*YAQNKTLI*SLHFKKIRIVTNA 10
           K+C EVYN IK S K + + +  + +L     RI  +A
Sbjct: 46  KFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDA 83


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 122 LNIVQKCIITLKHLNDMHRT 63
           LN+VQ+C+     +N+ H T
Sbjct: 591 LNVVQRCVSHFLAINESHFT 610


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 13  VGHDSD-FFEMETLNQSFVLCISFRCFNVI 99
           + H S  FF+   LN S+V+ +SF  +NV+
Sbjct: 180 MSHSSTPFFKSFDLNCSWVVQLSFSSWNVV 209


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 134 SVLFLNIVQKCIITLKHLNDMHR 66
           S+LFL++      T KH N + R
Sbjct: 270 SILFLHVALLVAFTCKHWNKLSR 292


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 689,737
Number of Sequences: 5004
Number of extensions: 9918
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 2,362,478
effective HSP length: 34
effective length of database: 2,192,342
effective search space used: 41654498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)