Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16l17
(612 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871 35 0.044
08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,287... 29 2.9
04_04_1298 + 32448759-32448870,32449125-32449210,32449309-32449521 29 2.9
08_02_1521 + 27650357-27651064 28 5.1
01_01_0359 + 2829325-2832076,2832223-2832593,2833335-2833695,283... 28 5.1
01_06_1832 + 40204513-40204722,40205200-40205562,40206038-40206553 28 6.7
12_02_0046 + 12830974-12832386 27 8.9
10_08_0614 - 19238064-19238132,19238381-19238407,19238436-192385... 27 8.9
08_02_1532 + 27675824-27676531 27 8.9
04_03_1017 + 21747044-21748051 27 8.9
>01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871
Length = 177
Score = 35.1 bits (77), Expect = 0.044
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = +2
Query: 68 GYCPPVCSPPDCRPICGPASPLLCQSSVPP 157
G CPP C PP C C P PL C PP
Sbjct: 128 GICPPPCPPP-CPLPCPPPCPLPCPPPCPP 156
>08_01_0321 +
2872609-2873027,2873477-2873905,2874743-2874944,
2875909-2875947,2876309-2876354,2877380-2877922,
2878827-2880847,2880972-2881215,2881642-2881684,
2881923-2881962,2883580-2883675,2883712-2883759,
2883964-2884290
Length = 1498
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +3
Query: 126 LRSFARAACHQHNGAIL*ILASTYTAVTLKLCNAMDDFYSE 248
+RSF C+ N ++ ++L CN M+D+Y E
Sbjct: 829 VRSFVATECNNGNNSVAPPRFQVLRVLSLDKCNGMEDYYIE 869
>04_04_1298 + 32448759-32448870,32449125-32449210,32449309-32449521
Length = 136
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 89 SPPDCRPICGPASPLLCQSSVPPTQRCYPVNPCINIYSC 205
S PDC CG SP C + V + +C PC +Y C
Sbjct: 89 SLPDCSHACGACSP--C-NRVMVSFKCSIAEPCPMVYRC 124
>08_02_1521 + 27650357-27651064
Length = 235
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = +3
Query: 210 LKLCNAMDDFYSEFKNV---LQVSFPETDGFSFQ 302
L LCNAM++ ++E K + LQVS + DG Q
Sbjct: 84 LDLCNAMNEVFTELKAIIQDLQVSLRKGDGAVLQ 117
>01_01_0359 +
2829325-2832076,2832223-2832593,2833335-2833695,
2833799-2833868,2834021-2834108,2834325-2834580,
2834758-2834883,2835217-2835425
Length = 1410
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = -2
Query: 143 SGKGAEMQVHRSDDNPEVNR--LVDNNPFXTSLTSSLVNLKNFTTISI 6
SG Q+ S N EV L+DNN F + SL NLK +++
Sbjct: 520 SGNQLSGQIPNSIGNCEVLEFLLLDNNSFGGDMPQSLTNLKGLNVLNL 567
>01_06_1832 + 40204513-40204722,40205200-40205562,40206038-40206553
Length = 362
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +1
Query: 175 CKSLHQHIQLLHSNYVTQWTISIVNLKMSYKFLFPKQMGFLFKILFSLQRTLEVG 339
CK++H H LLH + +NL + +F+ + + ++ L QR LE+G
Sbjct: 139 CKAVHPHCYLLH--------VKSINLTSATRFMSREYLELVWTKLSLQQRVLELG 185
>12_02_0046 + 12830974-12832386
Length = 470
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Frame = +2
Query: 77 PPVCSPPDCRPICGP--ASPLLCQSSV---PPTQRCYPVNP 184
PPV SPP + I GP ASP QS V P C P P
Sbjct: 279 PPVPSPPCAKKIRGPVSASPAARQSCVAASAPPPWCVPPPP 319
>10_08_0614 -
19238064-19238132,19238381-19238407,19238436-19238510,
19238637-19239317,19239423-19239554,19239676-19239723,
19239828-19239878,19240015-19240134,19241121-19241261,
19241701-19241865,19241981-19242160,19242314-19242445,
19242536-19242643,19242779-19242883,19243217-19243321,
19243407-19243463,19243991-19244010,19244299-19244377,
19245021-19245080,19245562-19245615,19246535-19246600,
19246938-19246990,19247361-19247450,19248152-19248249,
19248348-19248721
Length = 1029
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/56 (25%), Positives = 26/56 (46%)
Frame = -2
Query: 182 DLQDSTVVLVARCSGKGAEMQVHRSDDNPEVNRLVDNNPFXTSLTSSLVNLKNFTT 15
D+Q + L A+CS K E+++ +D+ +L N L ++ L+ T
Sbjct: 666 DMQQTITKLTAQCSEKAFELELRSADNRVLQEQLQQKNVEINELQEKVLRLEQQLT 721
>08_02_1532 + 27675824-27676531
Length = 235
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = +3
Query: 210 LKLCNAMDDFYSEFKNVLQ 266
L LCNAM++ ++E K+++Q
Sbjct: 84 LDLCNAMNEVFTELKSIIQ 102
>04_03_1017 + 21747044-21748051
Length = 335
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +2
Query: 77 PPVCSPPDCRPICGPASPLLCQS---SVPPTQRCYP 175
PP + PD P P+SPL + +VPP +R +P
Sbjct: 270 PPRAASPDYTPSTPPSSPLPSAAESFTVPPPRRYHP 305
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,846,812
Number of Sequences: 37544
Number of extensions: 264851
Number of successful extensions: 832
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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