Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16l08
         (671 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0011 + 19245742-19246440,19248361-19249170                       31   1.1  
03_02_0090 - 5564326-5567280                                           29   4.5  
07_01_0976 + 8226194-8226473,8227116-8227291,8227366-8227486,822...    28   7.8  
06_01_0142 + 1079053-1079700                                           28   7.8  

>11_06_0011 + 19245742-19246440,19248361-19249170
          Length = 502

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +2

Query: 281 ENKIAADYIVSELIDNEGTDVHREQSDALDPVWRIVNKYYR 403
           +N + +D  V++L ++   DV  E   ALD V R VN Y R
Sbjct: 399 QNAVGSDKAVAKLFNSISKDVVLEPESALDGVQRQVNAYCR 439


>03_02_0090 - 5564326-5567280
          Length = 984

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = -3

Query: 567 WAATTHTSADTPAARRCGT 511
           +AATTH SA TPAA   GT
Sbjct: 153 FAATTHQSAPTPAAAAVGT 171


>07_01_0976 +
           8226194-8226473,8227116-8227291,8227366-8227486,
           8228684-8228757,8229269-8229332,8229969-8230039,
           8230279-8230368,8230491-8230661,8231668-8231739
          Length = 372

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +3

Query: 618 PNWSPCCTRRLPPRGP 665
           P WS C    LPPRGP
Sbjct: 37  PPWSNCAKSGLPPRGP 52


>06_01_0142 + 1079053-1079700
          Length = 215

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +2

Query: 362 ALDPVWRIVNKYYRADVRVH-TRLDGEP 442
           A +P WR   +Y   DV++H T  DGEP
Sbjct: 84  AANPGWRAAVEYRGFDVKLHYTPFDGEP 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,563,831
Number of Sequences: 37544
Number of extensions: 273150
Number of successful extensions: 693
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)