Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16l06
(647 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69637-7|CAO78728.1| 433|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z69637-1|CAA93467.1| 601|Caenorhabditis elegans Hypothetical pr... 29 2.1
U58750-6|AAB00646.1| 2049|Caenorhabditis elegans Rod (drosophila... 29 3.8
Z37983-7|CAA86058.1| 1106|Caenorhabditis elegans Hypothetical pr... 28 6.6
U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein. 28 6.6
U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical pr... 28 6.6
AF098986-2|AAC67423.1| 410|Caenorhabditis elegans Hypothetical ... 28 6.6
AJ243182-1|CAB45863.1| 2857|Caenorhabditis elegans inositol 1,4,... 27 8.7
AJ243181-1|CAB45862.1| 2836|Caenorhabditis elegans inositol 1,4,... 27 8.7
AJ243180-1|CAB45861.1| 2892|Caenorhabditis elegans inositol 1,4,... 27 8.7
AJ243179-1|CAB45860.1| 2846|Caenorhabditis elegans inositol 1,4,... 27 8.7
AF168688-1|AAF05302.1| 2846|Caenorhabditis elegans inositol 1,4,... 27 8.7
AF036702-5|AAM98028.1| 1713|Caenorhabditis elegans Inositol trip... 27 8.7
AF036702-4|AAK68365.1| 2857|Caenorhabditis elegans Inositol trip... 27 8.7
AF036702-3|AAK68366.1| 2846|Caenorhabditis elegans Inositol trip... 27 8.7
AF036702-2|AAW30669.1| 2836|Caenorhabditis elegans Inositol trip... 27 8.7
AF036702-1|AAW30668.1| 2892|Caenorhabditis elegans Inositol trip... 27 8.7
>Z69637-7|CAO78728.1| 433|Caenorhabditis elegans Hypothetical
protein F35G2.1b protein.
Length = 433
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +1
Query: 304 IEAPGRRAPPVLAAPKTIAPLTRTTSRRLLECY 402
+E GRRAP +L T+AP+T TT+ L++C+
Sbjct: 116 MEQGGRRAP-ILTT--TLAPVTTTTNTPLIDCH 145
>Z69637-1|CAA93467.1| 601|Caenorhabditis elegans Hypothetical
protein F35G2.1a protein.
Length = 601
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +1
Query: 304 IEAPGRRAPPVLAAPKTIAPLTRTTSRRLLECY 402
+E GRRAP +L T+AP+T TT+ L++C+
Sbjct: 284 MEQGGRRAP-ILTT--TLAPVTTTTNTPLIDCH 313
>U58750-6|AAB00646.1| 2049|Caenorhabditis elegans Rod (drosophila
roughdeal) homologprotein 1 protein.
Length = 2049
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 445 DPAKHRVHVITCHSTEDKCFTSVTSRGSDNNYEAVIRG 558
+PA H + + CH+T C SR SDN + + G
Sbjct: 121 EPAPHEIDFVVCHTTSSVCQLIFGSR-SDNWHTITLPG 157
>Z37983-7|CAA86058.1| 1106|Caenorhabditis elegans Hypothetical
protein B0393.5 protein.
Length = 1106
Score = 27.9 bits (59), Expect = 6.6
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +1
Query: 559 CKSGCVGSPDTTCCELNRCNN 621
CK G G P + C ++N C N
Sbjct: 474 CKDGYEGDPSSECRDVNECKN 494
>U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein.
Length = 1404
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 540 VVIVAASGRNRREALILCTVTGDHVNSMLG 451
V IV ++ R+ + LI + G+HVN M+G
Sbjct: 739 VTIVFSTARDAADYLIASKIRGNHVNVMMG 768
>U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical
protein F35H10.10 protein.
Length = 1404
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 540 VVIVAASGRNRREALILCTVTGDHVNSMLG 451
V IV ++ R+ + LI + G+HVN M+G
Sbjct: 739 VTIVFSTARDAADYLIASKIRGNHVNVMMG 768
>AF098986-2|AAC67423.1| 410|Caenorhabditis elegans Hypothetical
protein C36C9.3 protein.
Length = 410
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +1
Query: 463 VHVITCHSTEDKCFTSVTSRGSDNNYEAVIRGCKSGCVGSPDTTCCELNRCN 618
+H + + +++ F+ + G Y+ V GCK CV D T +L N
Sbjct: 120 IHNYSVNGSDENNFSRIEYDGYKITYQPVNGGCKVSCVDQYDDTEPKLEPSN 171
>AJ243182-1|CAB45863.1| 2857|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2857
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 90 HYIFHVITETLILFLSSKFSS 28
HYI H +TE LI F + +S+
Sbjct: 1580 HYICHTVTEVLIKFFEAPYSA 1600
>AJ243181-1|CAB45862.1| 2836|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2836
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 90 HYIFHVITETLILFLSSKFSS 28
HYI H +TE LI F + +S+
Sbjct: 1561 HYICHTVTEVLIKFFEAPYSA 1581
>AJ243180-1|CAB45861.1| 2892|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2892
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 90 HYIFHVITETLILFLSSKFSS 28
HYI H +TE LI F + +S+
Sbjct: 1617 HYICHTVTEVLIKFFEAPYSA 1637
>AJ243179-1|CAB45860.1| 2846|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2846
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 90 HYIFHVITETLILFLSSKFSS 28
HYI H +TE LI F + +S+
Sbjct: 1571 HYICHTVTEVLIKFFEAPYSA 1591
>AF168688-1|AAF05302.1| 2846|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2846
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 90 HYIFHVITETLILFLSSKFSS 28
HYI H +TE LI F + +S+
Sbjct: 1571 HYICHTVTEVLIKFFEAPYSA 1591
>AF036702-5|AAM98028.1| 1713|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform g protein.
Length = 1713
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 90 HYIFHVITETLILFLSSKFSS 28
HYI H +TE LI F + +S+
Sbjct: 1571 HYICHTVTEVLIKFFEAPYSA 1591
>AF036702-4|AAK68365.1| 2857|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform e protein.
Length = 2857
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 90 HYIFHVITETLILFLSSKFSS 28
HYI H +TE LI F + +S+
Sbjct: 1580 HYICHTVTEVLIKFFEAPYSA 1600
>AF036702-3|AAK68366.1| 2846|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform f protein.
Length = 2846
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 90 HYIFHVITETLILFLSSKFSS 28
HYI H +TE LI F + +S+
Sbjct: 1571 HYICHTVTEVLIKFFEAPYSA 1591
>AF036702-2|AAW30669.1| 2836|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform d protein.
Length = 2836
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 90 HYIFHVITETLILFLSSKFSS 28
HYI H +TE LI F + +S+
Sbjct: 1561 HYICHTVTEVLIKFFEAPYSA 1581
>AF036702-1|AAW30668.1| 2892|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform a protein.
Length = 2892
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 90 HYIFHVITETLILFLSSKFSS 28
HYI H +TE LI F + +S+
Sbjct: 1617 HYICHTVTEVLIKFFEAPYSA 1637
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,305,354
Number of Sequences: 27780
Number of extensions: 246851
Number of successful extensions: 829
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -