Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16l05
         (284 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosacc...    88   3e-19
SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein L38|S...    81   2e-17
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc...    26   1.2  
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats...    23   6.5  

>SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 74

 Score = 87.8 bits (208), Expect = 3e-19
 Identities = 43/70 (61%), Positives = 53/70 (75%), Gaps = 1/70 (1%)
 Frame = +1

Query: 49  MPREIEDIXDFLXKARRKDXKSVKIKKNP-ENVKFKVRCSRFLYTLVITDXEKAXXLKQS 225
           MPR+I DI  FL  ARRKD  S +IKKN  ++VKFK+RCS++LYTLV+ D +KA  L+QS
Sbjct: 1   MPRQISDIKQFLEIARRKDATSARIKKNTNKDVKFKLRCSKYLYTLVVADAKKAEKLRQS 60

Query: 226 LPPGLQVKEV 255
           LPP L V EV
Sbjct: 61  LPPDLTVTEV 70


>SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 74

 Score = 81.4 bits (192), Expect = 2e-17
 Identities = 40/70 (57%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
 Frame = +1

Query: 49  MPREIEDIXDFLXKARRKDXKSVKIKKNPEN-VKFKVRCSRFLYTLVITDXEKAXXLKQS 225
           MPR++ DI  FL  A R D  S ++KKN    VKFK+RCSR+LYTLV+ D +KA  L+QS
Sbjct: 1   MPRQVTDIKLFLQLAHRGDATSARVKKNQNKAVKFKLRCSRYLYTLVVADAKKAEKLRQS 60

Query: 226 LPPGLQVKEV 255
           LPP L V EV
Sbjct: 61  LPPALTVTEV 70


>SPAC11E3.06 |map1||MADS-box transcription factor
           Map1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 32  NYSSSTCRVKSKISKTFXLRRGGKTPNRSK*RRTLRMSSSRF 157
           N   ST + +  ++K+F  R   +TP ++K R +L+ S   F
Sbjct: 269 NSPPSTYKHRRSLNKSFATRSEPQTPRKNKIRDSLQSSPLNF 310


>SPAC4G9.20c |||mitochondrial carrier with solute carrier
           repeats|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -1

Query: 263 HHFTSLTWRPGGKLCLSXSAFSXSVMTRVY 174
           HH T  +  PG KLC+  +    ++    Y
Sbjct: 202 HHLTDRSQTPGWKLCVFGAGAGYAMWLAAY 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 949,635
Number of Sequences: 5004
Number of extensions: 14038
Number of successful extensions: 30
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 65671360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)