Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16l05
         (284 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81463-5|CAB03853.1|   70|Caenorhabditis elegans Hypothetical pr...   109   2e-25
AL033514-26|CAA22110.1| 1144|Caenorhabditis elegans Hypothetical...    27   1.6  
AC006722-5|AAK68410.3|  703|Caenorhabditis elegans Hypothetical ...    25   6.6  
AC006645-10|AAF39849.1|  746|Caenorhabditis elegans Hypothetical...    25   6.6  

>Z81463-5|CAB03853.1|   70|Caenorhabditis elegans Hypothetical
           protein C06B8.8 protein.
          Length = 70

 Score =  109 bits (263), Expect = 2e-25
 Identities = 50/70 (71%), Positives = 59/70 (84%)
 Frame = +1

Query: 49  MPREIEDIXDFLXKARRKDXKSVKIKKNPENVKFKVRCSRFLYTLVITDXEKAXXLKQSL 228
           MP+EI++I DFL KARRKD KSVKIKKN  N KFKVRC+ +LYTLV+ D +KA  LKQSL
Sbjct: 1   MPKEIKEIKDFLVKARRKDAKSVKIKKNSNNTKFKVRCASYLYTLVVADKDKAEKLKQSL 60

Query: 229 PPGLQVKEVK 258
           PPG+QVKE+K
Sbjct: 61  PPGIQVKELK 70


>AL033514-26|CAA22110.1| 1144|Caenorhabditis elegans Hypothetical
           protein Y75B8A.26 protein.
          Length = 1144

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 79  FLXKARRKDXKSVKIKKNPENVKFKVRCSRFLYTLVI 189
           F  K+R+ + K  K++KN ENV+   R  + +Y L I
Sbjct: 524 FSEKSRKSEEKPQKVEKNVENVQLG-RVKKSVYQLYI 559


>AC006722-5|AAK68410.3|  703|Caenorhabditis elegans Hypothetical
           protein Y19D10A.10 protein.
          Length = 703

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 2   LLDPLTVLVENYSSSTCRVKSKISKTFXLRRGGKTP 109
           LL PL V ++ YSS  CRV   +  +      G  P
Sbjct: 123 LLFPLAVSIDFYSSFLCRVLQGMGSSIIFTSVGVVP 158


>AC006645-10|AAF39849.1|  746|Caenorhabditis elegans Hypothetical
           protein F56A4.11 protein.
          Length = 746

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 2   LLDPLTVLVENYSSSTCRVKSKISKTFXLRRGGKTP 109
           LL PL V ++ YSS  CRV   +  +      G  P
Sbjct: 166 LLFPLAVSIDFYSSFLCRVLQGMGSSIIFTSVGVVP 201


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,237,660
Number of Sequences: 27780
Number of extensions: 76339
Number of successful extensions: 174
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 270584450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)