Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16l04
         (195 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0128 - 10437407-10438049,10438097-10438272                       28   1.2  
08_01_0923 - 9095162-9095281,9095402-9095551,9095648-9095783,909...    27   2.8  
06_03_0175 + 17553447-17553667,17555313-17555467,17555625-175557...    26   4.9  
06_01_0816 - 6171189-6171255,6171277-6171441,6172037-6172618,617...    26   4.9  

>11_03_0128 - 10437407-10438049,10438097-10438272
          Length = 272

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 190 STTCRTARRAYSKARMACDTGGKAS 116
           STTCRT  RA   +   C TG + S
Sbjct: 140 STTCRTCCRATPNSTSPCKTGSRCS 164


>08_01_0923 -
           9095162-9095281,9095402-9095551,9095648-9095783,
           9095916-9095995,9096112-9096269,9096358-9096612,
           9096804-9097205,9097287-9097408,9097623-9097741,
           9098506-9098597,9098763-9098934
          Length = 601

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 122 GILALEGLVVLXPEDWSEISVLNWSQKIXIVGMV 21
           G+L LE +    P D S++S+L W++ +   G V
Sbjct: 489 GVLLLEIVTGRRPIDCSKLSLLQWAKPLLEAGQV 522


>06_03_0175 +
           17553447-17553667,17555313-17555467,17555625-17555713,
           17556253-17556376,17556920-17556989,17557345-17557441,
           17559365-17559427,17559504-17559581,17559675-17559737
          Length = 319

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 13  KPQTIPTIXIFWDQFNTEISLQSSGXKTTK 102
           KP+T+  I I W++  T I   +S  KT K
Sbjct: 204 KPETLYLIGIDWNKEYTNILASASADKTVK 233


>06_01_0816 -
           6171189-6171255,6171277-6171441,6172037-6172618,
           6173451-6173761
          Length = 374

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 104 GLVVLXPEDWSEISVLNWSQK 42
           G VV  P  W EI +  WSQ+
Sbjct: 42  GRVVAGPYCWQEIDIQEWSQQ 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,088,124
Number of Sequences: 37544
Number of extensions: 45980
Number of successful extensions: 86
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 14,793,348
effective HSP length: 44
effective length of database: 13,141,412
effective search space used: 262828240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)