Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16k24
(657 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 217 9e-58
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 142 5e-35
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 120 1e-28
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 109 5e-25
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 76 4e-15
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 75 7e-15
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 66 3e-12
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 39 7e-04
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ... 29 0.45
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 29 0.59
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 28 1.4
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 28 1.4
SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pom... 27 1.8
SPAC1805.16c |||purine nucleoside phosphorylase |Schizosaccharom... 27 3.1
SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe... 25 7.3
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 25 7.3
SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces p... 25 7.3
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 25 9.6
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p... 25 9.6
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 217 bits (531), Expect = 9e-58
Identities = 107/188 (56%), Positives = 135/188 (71%), Gaps = 16/188 (8%)
Frame = +1
Query: 142 VIDVGTGYTKLGFAGNKEPQFIIPSTIAIKET-AKVGDQSTRRMT-------------KA 279
++D GTGY+KLG+AGN P ++ P+ IA + A G + + + +A
Sbjct: 9 IMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASKGSGHLSSKRA 68
Query: 280 VEDLDFFIGDEAFE--ATGYSVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLM 453
EDLDFFIG++A + + GYS+ YP+RHG +E+WD MER+ +Q +FKYLR EPEDH+FL+
Sbjct: 69 TEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLL 128
Query: 454 TEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGD 633
TEPPLN PENRE AEIMFESFN GLYIAVQAVLALAASW S +R+ TG VVDSGD
Sbjct: 129 TEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGD 188
Query: 634 GVTHIVPV 657
GVTHI+PV
Sbjct: 189 GVTHIIPV 196
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 142 bits (343), Expect = 5e-35
Identities = 77/181 (42%), Positives = 106/181 (58%), Gaps = 1/181 (0%)
Frame = +1
Query: 118 MGDHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDF 297
M + + A VID G+G K GFAG+ P+ + PS VG + + D
Sbjct: 1 MEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHHGIMVGMGQKDS 52
Query: 298 FIGDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNT 474
++GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN
Sbjct: 53 YVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNP 112
Query: 475 PENREYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVP 654
NRE + +I+FE+FN P Y+A+QAVL+L AS ++ TGIV+DSGDGVTH VP
Sbjct: 113 KSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRT--------TGIVLDSGDGVTHTVP 164
Query: 655 V 657
+
Sbjct: 165 I 165
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 120 bits (290), Expect = 1e-28
Identities = 68/173 (39%), Positives = 101/173 (58%), Gaps = 1/173 (0%)
Frame = +1
Query: 142 VIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFE 321
V+D GTG+ K+G+A + P+F PS + + + ++ T V+ D +GDEA
Sbjct: 7 VLDNGTGFVKVGYAKDNFPRFQFPSIVG-RPILRAEEK-----TGNVQIKDVMVGDEAEA 60
Query: 322 ATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLA 498
VKYP+ +GI+ D++ M + + F+ L+ +P L+TEPP+N NRE +
Sbjct: 61 VRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMC 120
Query: 499 EIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPV 657
E MFE + G+Y+A+QAVL+L A S +G+VVDSGDGVTHIVPV
Sbjct: 121 ETMFERYGFGGVYVAIQAVLSLYAQGLS--------SGVVVDSGDGVTHIVPV 165
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 109 bits (261), Expect = 5e-25
Identities = 68/181 (37%), Positives = 103/181 (56%), Gaps = 3/181 (1%)
Frame = +1
Query: 124 DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFI 303
D+ P C ID G+G+ K GFAG+ P+ + P+ + + +V S ++ D F+
Sbjct: 8 DNQPIC-IDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQK--------DMFV 58
Query: 304 GDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVF--KYLRAEPEDHHFLMTEPPLNT 474
G EA G ++ P+ GI+++W ME I ++ + L PE+H L+TEPPL
Sbjct: 59 GSEAQNLRGLLKIQRPIERGIIQNWSDMEE-IWSYIYSDQQLNTLPEEHPLLLTEPPLAN 117
Query: 475 PENREYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVP 654
N+E +AE +E+ NVP L ++Q VLAL AS +RT TGIV++ GDG+TH VP
Sbjct: 118 IRNKEKIAEYFYETLNVPALSFSLQPVLALYAS--ART------TGIVLECGDGLTHSVP 169
Query: 655 V 657
+
Sbjct: 170 I 170
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 76.2 bits (179), Expect = 4e-15
Identities = 59/187 (31%), Positives = 85/187 (45%), Gaps = 12/187 (6%)
Frame = +1
Query: 121 GDHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFF 300
GD + A VID G+ +T++GF+G P+ ++PS G+ S R
Sbjct: 8 GDEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYC--------GEFSDGRR---------L 50
Query: 301 IGDEAFEAT--GYSVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNT 474
G+E + G +K +R+G VE+WD+ + + L+ P +H L+TEP N
Sbjct: 51 FGEEYIYKSNPGMEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNP 110
Query: 475 PENREYLAEIMFESFNVPGLYIAVQAVLALAASWK----------SRTSAERTFTGIVVD 624
PENR E MFES P Y+A Q A AS K R+S + G V+
Sbjct: 111 PENRVKTLETMFESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVLQ 170
Query: 625 SGDGVTH 645
G V H
Sbjct: 171 KGYQVQH 177
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 75.4 bits (177), Expect = 7e-15
Identities = 50/178 (28%), Positives = 83/178 (46%)
Frame = +1
Query: 124 DHLPACVIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFI 303
+ +P+ VID G+ +T+ G+AG + P I+PS ++ T R V++L
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYGVRSDV------TGRNKYVVDELQIHA 61
Query: 304 GDEAFEATGYSVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPEN 483
G VK +GI++DW+ E+ + + L+ P ++ ++TEP N
Sbjct: 62 -----PIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSV 116
Query: 484 REYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPV 657
R+ + E FE +VP Y+ QAV A+ KS T ++VD G + PV
Sbjct: 117 RQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKS--------TALIVDIGSDNASVTPV 166
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 66.5 bits (155), Expect = 3e-12
Identities = 42/172 (24%), Positives = 80/172 (46%)
Frame = +1
Query: 142 VIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFE 321
VID G+ + G+ G K+P+ + + ++ K+ +R T D +G +
Sbjct: 28 VIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRKL----SRTSTLVGNDTLIEVGSRSI- 82
Query: 322 ATGYSVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLAE 501
+ P ++ +WDLME+ ++ K L + +H MTEP N R + E
Sbjct: 83 -----ARSPFERNVISNWDLMEQVLDYTFLK-LGIDRMEHPICMTEPLANPTYVRSTMTE 136
Query: 502 IMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPV 657
++FE +N P + + + + + K +S GIV++ G+ +H++PV
Sbjct: 137 LLFELYNAPSVAYGIDGLFSFYHNTKPSSS------GIVLNLGNAASHVIPV 182
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 38.7 bits (86), Expect = 7e-04
Identities = 46/179 (25%), Positives = 70/179 (39%), Gaps = 7/179 (3%)
Frame = +1
Query: 142 VIDVGTGYTKLGFAGNKEPQFIIPSTIAIKETAKVGDQSTRRMTKA-VEDLDFFIGDEAF 318
V+D G + K GFAG K + IP+ + +K G++ A D A
Sbjct: 9 VLDNGAYHIKAGFAGGKVVE--IPNCLT---RSKDGNRLFLGNELANCNDFTTLQFRRAH 63
Query: 319 EATGYSVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLA 498
E GY V + + WDL+ R + + D+ L+T+P P
Sbjct: 64 EK-GYLVHWSTETAV---WDLVMRNVG-----VMEPSMADYSLLLTQPVFTMPSIEHNTI 114
Query: 499 EIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTG------IVVDSGDGVTHIVPV 657
+++FE F A L + E +TG +V+DSG THI+PV
Sbjct: 115 QLVFEEFQFDAYLPCTPAELIPWDHGSFTMNQEDAYTGQHGECVLVIDSGYSFTHIIPV 173
>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 805
Score = 29.5 bits (63), Expect = 0.45
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 509 LSHLMCQAFTLLYKPFLLWLRHGS 580
++ L+C + L+ KPF+LW RH +
Sbjct: 627 IAALICVPWLLIVKPFVLWRRHSN 650
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 29.1 bits (62), Expect = 0.59
Identities = 23/88 (26%), Positives = 35/88 (39%)
Frame = +1
Query: 259 TRRMTKAVEDLDFFIGDEAFEATGYSVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPED 438
T K +E LD E + + VK + + L RY VF + + E E
Sbjct: 326 TENFKKVLEVLDHSTRQENYSKSSKKVKKSSSLERIINMVLSNRYDPIIVFCFSKKECEI 385
Query: 439 HHFLMTEPPLNTPENREYLAEIMFESFN 522
+ + LN EN+E + EI + N
Sbjct: 386 NAHQFGKLDLNDTENKELVTEIFDSAIN 413
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 27.9 bits (59), Expect = 1.4
Identities = 18/88 (20%), Positives = 35/88 (39%)
Frame = +1
Query: 187 NKEPQFIIPSTIAIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFEATGYSVKYPVRHGIV 366
N +P I + E+ + + ++ K +E F+G AF+ G + +
Sbjct: 149 NHQPAVSIEESKEAVESTSQSSEISFKLIKVIEGHHTFVGGLAFDPMGQFLASQSFDHTL 208
Query: 367 EDWDLMERYIEQCVFKYLRAEPEDHHFL 450
+ W L +E+ + K P + FL
Sbjct: 209 KVWKLSTFGVEKSIAKPFEQMPTGNRFL 236
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 27.9 bits (59), Expect = 1.4
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -2
Query: 236 VSFIAMVDGIINCGSLLPAKPSLVYPVPTSI-TQAGKWSP 120
V+F M+ +I+C +++ AKPSL PV + G W+P
Sbjct: 2278 VAFTLMLAQVISCITIMIAKPSL--PVSDRVFPNLGAWNP 2315
>SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 220
Score = 27.5 bits (58), Expect = 1.8
Identities = 22/72 (30%), Positives = 34/72 (47%)
Frame = +1
Query: 442 HFLMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVV 621
+F + L+ P R+YL ++ I+V +L L WKS TSA +G V+
Sbjct: 109 YFTPAQAFLSQPIIRQYLTLLLICLVETTVYQISVVLLLCLTMGWKSWTSA----SGAVI 164
Query: 622 DSGDGVTHIVPV 657
S T ++PV
Sbjct: 165 LSSS--TRMLPV 174
>SPAC1805.16c |||purine nucleoside phosphorylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 315
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +1
Query: 421 RAEPEDHHFLMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLALAAS 573
+A+ + HH TEP + E REY+ E + E + P + I + L AS
Sbjct: 9 QAKQQPHH---TEPYIKALEAREYIIEQVPEELSKPKVAIICGSGLGTLAS 56
>SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 264
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -2
Query: 266 LRVL*SPTFAVSFIAMVDGII-NCGSLLPAKPSLVY 162
++++ S F + F+A + ++ N GSL+ AKP + Y
Sbjct: 191 IKLIDSKDFVLGFLAGLSVLLLNTGSLITAKPLISY 226
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +1
Query: 439 HHFLMTEPPLNTPENREYLAEIMFESFNVPGL 534
H FL+T TP+ L I+F PGL
Sbjct: 618 HSFLLTYKTFTTPQELFTLLVILFHELPPPGL 649
>SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 25.4 bits (53), Expect = 7.3
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = +1
Query: 448 LMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDS 627
++++ P TPE E+L ++ +FN + AS + T F +V D
Sbjct: 14 VISDAPKPTPEKGEFLGRVIRVAFN------PIDWKTLYNASIEKGTVGGTDFVAVVEDV 67
Query: 628 GDGV 639
G+GV
Sbjct: 68 GEGV 71
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 25.0 bits (52), Expect = 9.6
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = -1
Query: 306 TDEKIQIFDSLSHPPSTLIANFCSFFYRYG*WNNKLWFLVTGKTQFSIPGADIDNTS 136
TDE + DSLSHP +++ G NN + T +T+ +D TS
Sbjct: 271 TDESASLEDSLSHPTKSILDQLADKMEVDG-LNNNSNYSATPRTRVVNGQIVLDETS 326
>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 832
Score = 25.0 bits (52), Expect = 9.6
Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 292 DFFIGDEAFEATGYSVKYPVRHGI-VEDWDLMERYIEQC 405
D F+G + +EA V +P +G+ ++L Y++ C
Sbjct: 683 DVFVGYKYYEAVEREVLFPFGYGLSYTTFELSNLYLKNC 721
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,724,222
Number of Sequences: 5004
Number of extensions: 57252
Number of successful extensions: 164
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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