Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16k20
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    31   0.15 
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    30   0.27 
SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr 1...    29   0.82 
SPAC6G10.03c |||abhydrolase family protein, unknown biological r...    28   1.4  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    27   2.5  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    27   2.5  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   3.3  
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    26   4.4  
SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr...    26   4.4  
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar...    26   5.8  
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c...    26   5.8  

>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = -3

Query: 527  RVPPVNVASY--FVLTATVCIVPFIIVXXXXSRVCHWLY-VRFYYYIH 393
            R  P N+ S+  FV +A +  +PF +V      +C W Y ++FY +IH
Sbjct: 1284 REKPSNIYSWVAFVFSAIIVEIPFNLVFGTLFFLC-WFYPIKFYKHIH 1330


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +3

Query: 381 LDATMDVVVKPHIQPVAYSAGALRHNNKGYNANGRRKYEIRSD 509
           LD T+  +VKP  QP A S    R+NN    +N R K+  + D
Sbjct: 721 LDTTL--IVKPSGQPYAPSTSRERNNNISELSNSRTKHRAKDD 761


>SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 415

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +3

Query: 249 FWLDKITTEMKETHIQNNGSE---PNTTLQEAVFEKFGNYKLTRRTSLDATMDVVVKPH 416
           F+L+    E+K+ ++     +   P   + EA+FEK  N  L R + +  T    VK H
Sbjct: 12  FYLNVNKEELKKEYVGKTIQQVPTPGFVIDEAIFEKNCNRMLDRASDIGVTFRAHVKTH 70


>SPAC6G10.03c |||abhydrolase family protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 428

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -2

Query: 366 SIYSFQTFRTLPPEVWYSVHCH-YSVYVFLSSPL*FYQAKMVSPDLYLYNCV 214
           S +S + F TLPPE + ++H + YS++    S   +    +++P  +   C+
Sbjct: 298 SFWSSRRFSTLPPETFRALHNYCYSIFRLKGSSE-YALGNLLAPGAFARRCI 348


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 313 GSLPLFCICVSFISVVILSSQNGI 242
           G+ PL   C+ FIS VIL+   GI
Sbjct: 135 GNKPLLISCIKFISCVILTQVPGI 158


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
 Frame = +3

Query: 231 KDQEIPFWLDKITTEMKETHIQNNGSEPNTTLQEAVFEKFGNY---KLTRRTS--LDATM 395
           KDQ    +L ++  +  ++HI    +E +  L   + + FGNY   KL    S    +T 
Sbjct: 353 KDQHGCRYLQRLLEKKNQSHIDAVFAETHPYLAVLMVDAFGNYLCQKLFEHASEAQRSTF 412

Query: 396 DVVVKPHIQPVAYSAGALR 452
             ++ P + P++++    R
Sbjct: 413 IQIIAPKLVPISFNMHGTR 431


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 282  LSSPL*FYQAKMVSPDLYLYNCVHFV 205
            +S PL  YQ    +PDL+   C HF+
Sbjct: 1928 ISQPLTVYQFICKAPDLFFSCCSHFI 1953


>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = -3

Query: 368 SQFIVSKLFEHCLLKCGIRFTAIILYMC---FFHLRCNFIKPKWYLLIFICITVSISFIF 198
           +Q++ +  F  CL    + F  + LY     FF+L    +KPK     FI ++V++ F F
Sbjct: 204 NQYVAATFF-FCL---ALTFKQMALYFAPPIFFYLLGTCVKPKIRFSRFILLSVTVVFTF 259


>SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 323

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 219 SYTNKDQEIPFWLDKITTEMKET 287
           S TN++QE  FWL K+   +++T
Sbjct: 144 SETNEEQERKFWLTKLQIAVEDT 166


>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
           Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 768

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +3

Query: 417 IQPVAYSAGALRHNNKGYNANGRRKYEIRSDIDWGDSTSNDFLSD 551
           + PV  +A      +KG +    R   IR D  W D+T+++ +S+
Sbjct: 702 LSPVYKAAIGYVQEDKGISLRFPRFIRIREDKSWEDATTSEQVSE 746


>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 683

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +3

Query: 492 YEIRSDIDWGDSTSNDFLSDLLPHYVTPRPSRFSSAIDEDFQDVIMASRLQD 647
           Y   S++D   + + D +S LL H  + RPS       E F    MAS L D
Sbjct: 257 YSFPSNVDIS-AEAKDLISSLLTHDPSIRPSIDDIVDHEFFHTGYMASTLPD 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,840,791
Number of Sequences: 5004
Number of extensions: 61382
Number of successful extensions: 214
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)