Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16k13
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    29   0.59 
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   7.3  
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   7.3  
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c...    25   7.3  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    25   7.3  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   9.6  

>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +2

Query: 257 RDSDVFVASYPR-SGTTWTQELVWMVANDLDYEKSAAVPLTQRYPFLEF 400
           R   + ++S P  +GT     L+ M+ N L YEK   V   + Y +L F
Sbjct: 144 RQQVMTLSSIPHLAGTVGDSSLLQMIMNRLYYEKGTIVDFREFYAYLNF 192


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 304 RSSRSRITSYKDVTVP*WHIVDFTCFFGVLL 212
           R + + + S K+ + P   +V F  FFGV++
Sbjct: 313 RKTETILKSLKESSTPLVQVVSFNAFFGVMI 343


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = -2

Query: 92  YFLN-PSQKISIDFLVFYLNLVNK 24
           +F+N P+  +S+  L+F+LNLV K
Sbjct: 247 FFINLPTGGLSLALLIFFLNLVPK 270


>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = -2

Query: 92  YFLN-PSQKISIDFLVFYLNLVNK 24
           +F+N P+  +S+  L+F+LNLV K
Sbjct: 247 FFINLPTGGLSLALLIFFLNLVPK 270


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = +2

Query: 371 LTQRYPFLEFSICVHP--VMKKKFTEENSYSED-KLKLLEDVIQPGT 502
           LT   PF +  IC     V KK FTEE    ED K   LE ++ P T
Sbjct: 320 LTASQPFSK-GICNDSMQVAKKNFTEEIPLKEDEKDNELEHLVSPAT 365


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +2

Query: 89  NNNVPLEINNVDQELANKIMKLFTGEHTG 175
           NNN PL++++++ +   ++  L TG  +G
Sbjct: 19  NNNPPLDMSSLNNDFGQQLDSLATGVGSG 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,564,515
Number of Sequences: 5004
Number of extensions: 51208
Number of successful extensions: 131
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)