Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16k12
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0286 - 2094920-2097805                                           30   1.4  
03_02_0434 + 8403630-8405666                                           29   4.3  
03_06_0358 + 33366265-33366447,33367371-33367468,33367910-333689...    28   7.5  
10_08_0331 - 16831646-16834756                                         27   9.9  
01_05_0164 + 18827390-18827710                                         27   9.9  

>06_01_0286 - 2094920-2097805
          Length = 961

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
 Frame = -1

Query: 350 SASLLSIPNWRRCSDTEGLQSHKSSSIFTARIPCSLVISNTDKYFAIKSHIFGG*V--RS 177
           + +L  +P+W   S T  +    S ++ T  +P SLV   + ++  + S+   G +    
Sbjct: 460 TGTLGQLPDWLWTSLTSLINLDLSDNLLTGMLPASLVHMKSLQFLGLSSNQLEGQIPDMP 519

Query: 176 TSLVISDMSSLSPSGS 129
            SL + D+S+ S SGS
Sbjct: 520 ESLDLLDLSNNSLSGS 535


>03_02_0434 + 8403630-8405666
          Length = 678

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 22/72 (30%), Positives = 35/72 (48%)
 Frame = +1

Query: 163 ITREVLRTQPPNICDFIAKYLSVLLITREHGILAVKILEDLCDCRPSVSEHLLQLGIDKS 342
           ITR  ++ QP +I D IAK +   +  +E  IL   +L    D  P+     +   +D++
Sbjct: 178 ITRVPVQGQPDDIYDQIAKIIKEYIAPKESIIL--NVLSATVDF-PTCESIRMSQQVDRT 234

Query: 343 DAEVLAQVIKAE 378
               LA V KA+
Sbjct: 235 GERTLAVVTKAD 246


>03_06_0358 +
           33366265-33366447,33367371-33367468,33367910-33368945,
           33369042-33369554,33370456-33370644,33370715-33370848,
           33371196-33371358
          Length = 771

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -1

Query: 446 RIFLMISVSFNVSFPSIGSKPS-TSALITWASTSASLLSI 330
           ++F +I+ + + S    G +PS  S LITWA+  A L ++
Sbjct: 286 QVFSVIAQALSDSLELFGDEPSYLSELITWATEQAMLFAL 325


>10_08_0331 - 16831646-16834756
          Length = 1036

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -1

Query: 449 FRIFLMISV-SFNVSFPSIGSKPSTSALITWASTSASLLSIPNWRRCS 309
           F + L++++ S   S  +  S   T AL+ W S+ A  +++  W R S
Sbjct: 9   FLLPLLVAIASIPGSVNAAASSQQTDALLAWKSSLADPVALSGWTRAS 56


>01_05_0164 + 18827390-18827710
          Length = 106

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 522 VQENFDGEGAKTASRRALGARG 587
           V+E   GEGA+T    A+GARG
Sbjct: 18  VKEAATGEGARTVKEAAVGARG 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,273,980
Number of Sequences: 37544
Number of extensions: 316449
Number of successful extensions: 973
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)