Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16k10
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    27   3.4  
SPAC1071.09c |||DNAJ domain protein, DNAJC9 family|Schizosacchar...    26   6.0  
SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces ...    26   6.0  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    26   6.0  
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy...    25   7.9  
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    25   7.9  

>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 18/68 (26%), Positives = 26/68 (38%)
 Frame = +2

Query: 77  ADLPEPENEDSEPRIRPLERIKLHPKYPIEPSAYGKGKNFSRPWILQDGRTVPGIGSEMR 256
           A  P PE+E S+P I P +  K +     E  A     +   P   QD  T   + +   
Sbjct: 299 APAPAPESEPSKPSIAPSQPSKTNVSAAYEKPAELSSSSVPFPHKSQDSATPANVETTPS 358

Query: 257 ENYQIPKR 280
                PK+
Sbjct: 359 TATSAPKK 366


>SPAC1071.09c |||DNAJ domain protein, DNAJC9
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +2

Query: 320 DFFWEQMLDEVIEELATSQPVSEYCTEY 403
           DF W++ LDE+ + + + + ++E+   Y
Sbjct: 109 DFDWKEWLDELYQGVVSGETLNEFKASY 136


>SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 407

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/27 (51%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
 Frame = +2

Query: 152 KYPI--EPSAYGKGKNFSRPWILQDGR 226
           K PI  E   Y KG  F RP I  DGR
Sbjct: 11  KEPISYESEIYAKGLKFQRPQITVDGR 37


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1325

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 77   ADLPEPENEDSEPRIRPLERIKLHPKYPIE 166
            ADLPE E+ +  P +   ER+ L  K  ++
Sbjct: 1060 ADLPEAESNEKLPMVNTFERLYLQFKNELD 1089


>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 384

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 24/117 (20%), Positives = 43/117 (36%)
 Frame = +2

Query: 158 PIEPSAYGKGKNFSRPWILQDGRTVPGIGSEMRENYQIPKRPPHTEGIRKRMLTDFFWEQ 337
           PI P +  +       + L D      +GS  +  + IP+R P  E +    + D     
Sbjct: 240 PIVPPSVNETDASVNGYPLVDVNFGQAVGSSSKSYFNIPER-PRRERLHAMRVRDIRSHS 298

Query: 338 MLDEVIEELATSQPVSEYCTEYDANYIKDEFEPRNLEVAADKNMHLKYPLYGTGSSA 508
               +    + S  ++ Y T    +       P    + A    +L+ PL+G+  SA
Sbjct: 299 TNTTITSVDSASTALNSYSTPNSVSRKLTNLTPAARRLVA--RSYLRSPLHGSSPSA 353


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +2

Query: 383 SEYCTEYDANYIKDEFEPRNLEVAADKNMHLKYPLYGTGSSAI 511
           S YC +YD   +    + R + V    +  + Y LYG   S +
Sbjct: 223 SVYCVQYDDEIMVSGSKDRTVSVWDVNSRFILYKLYGHSGSVL 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,058,770
Number of Sequences: 5004
Number of extensions: 67794
Number of successful extensions: 187
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)