Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16k05
         (714 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132948-33|CAD57708.2|  734|Caenorhabditis elegans Hypothetical...    31   0.82 
AL132948-32|CAD31833.3|  731|Caenorhabditis elegans Hypothetical...    31   0.82 
Z83216-4|CAB62781.1|  314|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z68320-4|CAA92705.4|  448|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U64835-6|AAG24199.1|  341|Caenorhabditis elegans Serpentine rece...    29   3.3  
AL008881-4|CAH10844.2|  448|Caenorhabditis elegans Hypothetical ...    29   3.3  
AF016680-1|AAB66163.2|  458|Caenorhabditis elegans Synaptotagmin...    29   3.3  
Z68493-11|CAA92798.2|  174|Caenorhabditis elegans Hypothetical p...    29   4.4  
U41037-3|AAA82389.1|  378|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    28   7.6  
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    28   7.6  

>AL132948-33|CAD57708.2|  734|Caenorhabditis elegans Hypothetical
           protein Y39B6A.43b protein.
          Length = 734

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +3

Query: 531 SCDPL--NVQKNLVCEKTPKLFNPKLPSIPRTMSSLGSSEKISETKINLL 674
           S DP+  N+QKNL     P L     P  P+  +S  S+E + E K+ L+
Sbjct: 620 SMDPVVENLQKNLAPSPPPLLKRVTFPPEPQQSTSSTSAENLHELKLQLI 669


>AL132948-32|CAD31833.3|  731|Caenorhabditis elegans Hypothetical
           protein Y39B6A.43a protein.
          Length = 731

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +3

Query: 531 SCDPL--NVQKNLVCEKTPKLFNPKLPSIPRTMSSLGSSEKISETKINLL 674
           S DP+  N+QKNL     P L     P  P+  +S  S+E + E K+ L+
Sbjct: 617 SMDPVVENLQKNLAPSPPPLLKRVTFPPEPQQSTSSTSAENLHELKLQLI 666


>Z83216-4|CAB62781.1|  314|Caenorhabditis elegans Hypothetical
           protein C08F11.5 protein.
          Length = 314

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +3

Query: 258 VEVLDVEHF-LCIQNYITTVYPMGHCLSCFKSQANAEIRSITGPHAKNDE 404
           +E+L   +F LC++N+    +P+ + +S FK  A  +I +IT    + DE
Sbjct: 143 LEMLQSLNFKLCVKNFSVARFPLKYVISFFKCLAAEQIENITFYSDEYDE 192


>Z68320-4|CAA92705.4|  448|Caenorhabditis elegans Hypothetical
           protein W07A12.4 protein.
          Length = 448

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
 Frame = +3

Query: 537 DPLN-VQKNLVCEKTPKLFNPKLPSIPRTMSSLGSSEKIS---ETKINLLFNQYKDS 695
           D LN V+K+ + E  PKLF P L  +    ++L  S ++S    TK   L  QY+D+
Sbjct: 257 DELNEVEKSAISEMHPKLFQPPL-LLSYKFNALPLSSRMSCKDFTKKQFLLRQYEDN 312


>U64835-6|AAG24199.1|  341|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 9 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 21/74 (28%), Positives = 34/74 (45%)
 Frame = -1

Query: 324 PLDKLL*YNFEYIKNVPHPKLRLKSFSLLLYIM*ELN*FFFLLSKYKRYIFLFAFYRSYK 145
           PLD  + + F  + +  HP L   S+S LL++         L   Y+ YI   A   ++K
Sbjct: 67  PLDYAMAHIFYGLCHFGHPFLCYASWSALLHLFIHSMWSLLLSFAYRNYILSSAPPSTWK 126

Query: 144 VRFQ*LILYVPKST 103
           V    + +Y+P  T
Sbjct: 127 VFMFSVFIYIPSFT 140


>AL008881-4|CAH10844.2|  448|Caenorhabditis elegans Hypothetical
           protein W07A12.4 protein.
          Length = 448

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
 Frame = +3

Query: 537 DPLN-VQKNLVCEKTPKLFNPKLPSIPRTMSSLGSSEKIS---ETKINLLFNQYKDS 695
           D LN V+K+ + E  PKLF P L  +    ++L  S ++S    TK   L  QY+D+
Sbjct: 257 DELNEVEKSAISEMHPKLFQPPL-LLSYKFNALPLSSRMSCKDFTKKQFLLRQYEDN 312


>AF016680-1|AAB66163.2|  458|Caenorhabditis elegans Synaptotagmin
           protein 5 protein.
          Length = 458

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = +3

Query: 96  WYWWILVHIISITEIL--PCSFY 158
           W+WW+LV I+S+  ++   C+ Y
Sbjct: 4   WWWWVLVAILSLCAVILSSCALY 26


>Z68493-11|CAA92798.2|  174|Caenorhabditis elegans Hypothetical
           protein C33A12.15 protein.
          Length = 174

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
 Frame = +3

Query: 534 CDPLNVQKNLVCEKTPKLFNPKL----PSIPRTMSSLGSSE--KISETKINL 671
           CDP N  +++ C KT K+F P+       IP+ + ++G  E  KI   K  L
Sbjct: 107 CDPSNTIRSMQCAKTIKIFIPQEFVSDGHIPKMIFNIGDVELTKIETEKYGL 158


>U41037-3|AAA82389.1|  378|Caenorhabditis elegans Hypothetical
           protein T24C12.1 protein.
          Length = 378

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/60 (26%), Positives = 24/60 (40%)
 Frame = -2

Query: 410 CHLIIFCVGSCDTSYFSISLRFETAETVAHWINCCNIILNT*KMFHIQNFDLRASHSFYT 231
           C + I     C  S  +I  R        HWI CC +I++   +F   +    A  S Y+
Sbjct: 122 CFINICLALLCIASIVAIRKRQIGVVVFCHWIKCCTLIVDAVMVFVFASIMSTAHTSLYS 181


>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
           lineage protein 13 protein.
          Length = 2248

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
 Frame = +3

Query: 282 FLCIQ-NYITTVYPMGHCLSCFKSQAN-AEI-RSITGPHA 392
           + C + NYI +  P+ HCLSC  ++ +  E+  + +GPHA
Sbjct: 771 YFCTKCNYIFSKDPVVHCLSCEVTEDDLIEVYHAASGPHA 810


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
           protein LIN-13 protein.
          Length = 2248

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
 Frame = +3

Query: 282 FLCIQ-NYITTVYPMGHCLSCFKSQAN-AEI-RSITGPHA 392
           + C + NYI +  P+ HCLSC  ++ +  E+  + +GPHA
Sbjct: 771 YFCTKCNYIFSKDPVVHCLSCEVTEDDLIEVYHAASGPHA 810


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,033,612
Number of Sequences: 27780
Number of extensions: 302592
Number of successful extensions: 734
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)