Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16k04
(707 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr 2... 184 1e-47
SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase |Schizosa... 170 2e-43
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 28 1.5
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po... 27 2.0
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 27 3.5
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 26 6.1
SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase |Schizosaccharom... 26 6.1
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 25 8.0
>SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 439
Score = 184 bits (447), Expect = 1e-47
Identities = 94/194 (48%), Positives = 129/194 (66%), Gaps = 1/194 (0%)
Frame = +1
Query: 115 MPIKLLLARQIFDSTGVPTVEVDMVTELGLFRIGVPSTDSKKIAEATQLRDNNPAQYFGM 294
M I+ + ARQI+DS G PTVEVD+ TE G+ R VPS S I EA ++RD + ++ G
Sbjct: 1 MAIQKVFARQIYDSRGNPTVEVDLTTETGIHRAIVPSGASTGIWEALEMRDGDKTKWGGK 60
Query: 295 GVSSAIKNINVIIAPELIKQNLEVTMQKEIDQFLISLDGTENRSRLGANAILCVSLXXXX 474
GV A+ N+N IIAP ++K NL+VT QK D+FL+ LDGTEN+S+LGANAIL VS+
Sbjct: 61 GVLKAVGNVNNIIAPAVVKANLDVTDQKAADEFLLKLDGTENKSKLGANAILGVSMAICR 120
Query: 475 XXXXXXXXPLYRHISDMAGVT-TIILPVPHFTILTGGILSSNGLPFQEYIIMPTGASSFA 651
PL+++I++ G +LPVP F +L GG + L FQE++I+PTGA SF+
Sbjct: 121 AGAAQKKLPLWKYIAENFGTKGPYVLPVPSFNVLNGGSHAGGDLAFQEFMILPTGAPSFS 180
Query: 652 DAMRIGSEIYRYVK 693
+AMR G+E Y +K
Sbjct: 181 EAMRWGAETYHTLK 194
>SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 440
Score = 170 bits (413), Expect = 2e-43
Identities = 86/192 (44%), Positives = 126/192 (65%), Gaps = 1/192 (0%)
Frame = +1
Query: 121 IKLLLARQIFDSTGVPTVEVDMVTELGLFRIGVPSTDSKKIAEATQLRDNNPAQYFGMGV 300
I+ + +R I+DS G PTVEV++ TELG FR VPS S EA +LRDN+ ++ G GV
Sbjct: 4 IQKIYSRSIYDSRGNPTVEVELTTELGTFRSMVPSGASTGEWEAKELRDNDKNKWGGKGV 63
Query: 301 SSAIKNINVIIAPELIKQNLEVTMQKEIDQFLISLDGTENRSRLGANAILCVSLXXXXXX 480
+ A+ N+N II P L+K ++++T Q+ ID+F+I LDGT ++S+LGAN+I+ VS+
Sbjct: 64 TIAVHNVNNIIGPALVKSDIKITDQRGIDEFMIKLDGTNDKSKLGANSIVGVSMAVARAA 123
Query: 481 XXXXXXPLYRHISDMAG-VTTIILPVPHFTILTGGILSSNGLPFQEYIIMPTGASSFADA 657
PLY +I +AG TT +PVP F +L GG + L FQE++IMP A +F++
Sbjct: 124 AAFLKIPLYEYIGKLAGSKTTECIPVPSFNVLNGGRHAGGDLAFQEFMIMPIKAPTFSEG 183
Query: 658 MRIGSEIYRYVK 693
+R GSE+Y +K
Sbjct: 184 LRWGSEVYHTLK 195
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 27.9 bits (59), Expect = 1.5
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +3
Query: 549 ASTTLYYSHWWNFIFKWTAVSRIH 620
AS WWN +W A+ RIH
Sbjct: 881 ASQVFMMDPWWNGAVQWQAMDRIH 904
>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 330
Score = 27.5 bits (58), Expect = 2.0
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -1
Query: 77 CSFKIENSLRMYRNVLFVRHG 15
C+++++ SLR YR LF R+G
Sbjct: 184 CNYQLDRSLRPYRQWLFRRYG 204
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 567 YSHWWNFIFKWTAVSRIHNYAYRSIFVCRCD 659
Y WW F+W A + NY Y SI + D
Sbjct: 596 YIGWW---FRWIAYANPVNYGYESIMLNEFD 623
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.8 bits (54), Expect = 6.1
Identities = 9/20 (45%), Positives = 17/20 (85%)
Frame = +1
Query: 22 RTNRTFLYIRKEFSILKEQN 81
RTN + LY +K+F++L+E++
Sbjct: 156 RTNTSLLYRQKKFNLLREES 175
>SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 236
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = +1
Query: 328 IIAPELIKQNLE--VTMQKEIDQFLISLDGTENRSRLG 435
++A ++++ N + +QKE ++ DGT NR++LG
Sbjct: 34 VLARKVVEPNTPCLIKIQKEFGNEVLHEDGTLNRAKLG 71
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 25.4 bits (53), Expect = 8.0
Identities = 16/54 (29%), Positives = 21/54 (38%)
Frame = -3
Query: 669 TNTHRICKRRCSCRHNYVFLKRQSI*R*NSTSENSKVWYWQNYCSDACHIRYVP 508
T+ CK CSC H+ K N T + K W + +C R VP
Sbjct: 163 THIDHKCKEHCSCHHD----KFPRPVPHNGTKPDHKPWKHEEHCHHGKFPRPVP 212
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,942,960
Number of Sequences: 5004
Number of extensions: 61040
Number of successful extensions: 148
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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