Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16j19
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|ch...    71   2e-13
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb...    26   5.7  
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2...    26   5.7  
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    26   5.7  
SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa...    25   7.5  
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    25   7.5  

>SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 341

 Score = 70.5 bits (165), Expect = 2e-13
 Identities = 46/161 (28%), Positives = 71/161 (44%), Gaps = 8/161 (4%)
 Frame = +2

Query: 185 STGPAGMKVTICGAAGATGXXXXXXXXXXXXXDEIALYDITATCGYGMELSHVDTKCKVS 364
           +T     KV + GA G  G              E+AL+DI    G   ++ H++T   V 
Sbjct: 23  TTSSRAFKVAVLGAGGGIGQPLSMLLKLNDKVSELALFDIRGAPGVAADIGHINTTSNVV 82

Query: 365 SFSGRHM-LCDALKDSKVVVIVA-------RNESDTFESSAPVLTELTLQICNTCPLAFT 520
            ++     L  AL  + VV+I A           D F ++A ++ +L      TCP A  
Sbjct: 83  GYAPDDKGLEKALNGADVVIIPAGVPRKPGMTRDDLFATNASIVRDLAFAAGETCPEAKY 142

Query: 521 IVATEPVEAMVPLVAEIQRLRGVYNPRTLLGCVELNCVRAN 643
           +V T PV + VP+  +     GV+ P+ L G   L+ VRA+
Sbjct: 143 LVVTNPVNSTVPIFKKALERVGVHQPKHLFGVTTLDSVRAS 183


>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 10/126 (7%)
 Frame = +2

Query: 203 MKVTICGAAGATGXXXXXXXXXXXXXDEIALYDITATCGYG--MELSHV-DTKCKVSSFS 373
           +K+ I GA G  G              EI + D+      G  M+L+H      +   + 
Sbjct: 21  IKIVIVGA-GNVGSTTAFTLLLSGLAAEIVIIDLNKKKAEGEAMDLNHAAPLSHETRVYL 79

Query: 374 GRHMLCDALKDSKVVVIVA-RNES------DTFESSAPVLTELTLQICNTCPLAFTIVAT 532
           G +  C   KD+  VVI A +N+       D  +++  +  E+  ++      A  +VAT
Sbjct: 80  GDYKDC---KDATAVVITAGKNQKPGETRMDLLKANISIFKEILREVTKYTKDAILLVAT 136

Query: 533 EPVEAM 550
            PV+ +
Sbjct: 137 NPVDVL 142


>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = -3

Query: 556 WYHGFYWLRCYYSKCQWTRIADL*CEFGQNRRTRLK 449
           WYH   W   Y  K +W  + +        R +RLK
Sbjct: 207 WYHDDIWNMKYLPKFKWHHLTEQIAAENAARESRLK 242


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 344 LRDLIPYRSRTLQLYRKALFHLITDIVL 261
           LRDL P R + ++++  AL+HL   + L
Sbjct: 389 LRDLSPSRVKDMEVFSTALWHLQKSVPL 416


>SPAC23D3.08 |usp108||U1 snRNP-associated protein
           Usp108|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 146 KIAKHGKISMENYSTGPAGMKVTIC 220
           +I K+G++ +E YS+     K+ IC
Sbjct: 57  EILKNGQVRVETYSSSNTARKIFIC 81


>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 22/69 (31%), Positives = 31/69 (44%)
 Frame = +1

Query: 76  NSRLTQKYLPDRTKTNYKFQ*FIENSQTWKN*YGKL*YWPGRYESHYLWSSRRYRSTFSA 255
           NSR  +K LPDR     KF+  I N+ +W   + K      RY  H L S   Y      
Sbjct: 71  NSRDLRKQLPDRP----KFKKRIPNNDSWVVVFTK----KNRYFFHNLKSHESYWEPPLE 122

Query: 256 ATKTMSVIR 282
            +K + ++R
Sbjct: 123 ISKDLKILR 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,550,606
Number of Sequences: 5004
Number of extensions: 48222
Number of successful extensions: 116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)