Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16j19
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002197-5|AAB53985.1|  341|Caenorhabditis elegans Malate dehydr...    88   6e-18
U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crum...    28   5.3  
AL021483-1|CAA16348.1|  272|Caenorhabditis elegans Hypothetical ...    28   5.3  
U53151-3|AAB37067.2|  388|Caenorhabditis elegans Serpentine rece...    28   6.9  
Z82266-6|CAB05176.1|  393|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U55370-7|AAA97998.2|  388|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>AF002197-5|AAB53985.1|  341|Caenorhabditis elegans Malate
           dehydrogenase protein 1 protein.
          Length = 341

 Score = 87.8 bits (208), Expect = 6e-18
 Identities = 50/171 (29%), Positives = 86/171 (50%), Gaps = 7/171 (4%)
 Frame = +2

Query: 167 ISMENYSTGPAGMKVTICGAAGATGXXXXXXXXXXXXXDEIALYDITATCGYGMELSHVD 346
           +S+ + S  P   KV + GAAG  G               +ALYD+  T G   +LSH+D
Sbjct: 20  VSVRHSSQAP---KVALLGAAGGIGQPLGLLLKQDPLVAHLALYDVVNTPGVAADLSHID 76

Query: 347 TKCKVSSFSGRHMLCDALKDSKVVVIVA-------RNESDTFESSAPVLTELTLQICNTC 505
           +  KV++ +G   L  A++++ V+VI A           D F ++A ++ +L   I    
Sbjct: 77  SNAKVTAHTGPKELYAAVENADVIVIPAGVPRKPGMTRDDLFNTNAGIVRDLAAVIAKAS 136

Query: 506 PLAFTIVATEPVEAMVPLVAEIQRLRGVYNPRTLLGCVELNCVRANTVLAD 658
           P A   + T PV + VP+ +E+ +  GVY+P+ + G   L+ VR+   +++
Sbjct: 137 PKALIAIITNPVNSTVPIASEVLKKAGVYDPKRVFGVTTLDVVRSQAFVSE 187


>U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crumbs
            homolog protein 1 protein.
          Length = 1722

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 588  CTTLGRCSAVWN*TV*ELTRYWR 656
            C++ G CS VWN TV      WR
Sbjct: 1376 CSSRGACSPVWNNTVCNCDNNWR 1398


>AL021483-1|CAA16348.1|  272|Caenorhabditis elegans Hypothetical
           protein Y38H8A.1 protein.
          Length = 272

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = -1

Query: 504 HVLQICNVSSVKTGALDSNVSDSFLATIT---TTLESFKASHSIC 379
           H  ++C+V +  TG+L S++S++F+        TL  F  S  +C
Sbjct: 223 HESELCDVHAPSTGSLISDISNTFIYKCNGTQWTLHGFPLSSVVC 267


>U53151-3|AAB37067.2|  388|Caenorhabditis elegans Serpentine
           receptor, class r protein9 protein.
          Length = 388

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = -3

Query: 580 QSLYFGYKWYHGFYWLRCYYSKCQWTR--IADL*CEFGQNRRTRLKRIRLVSRHNYNNFR 407
           ++ +FGY    GF    C +    WT+  +A   C+    R  R++ +R V+    +NFR
Sbjct: 78  EASFFGYPAIFGFVCSLCLFG---WTKNGLASKFCK----RLVRVRMLRQVANPKLDNFR 130

Query: 406 IL 401
           IL
Sbjct: 131 IL 132


>Z82266-6|CAB05176.1|  393|Caenorhabditis elegans Hypothetical
           protein F23B2.10 protein.
          Length = 393

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
 Frame = +2

Query: 326 MELSHVDTKCKVSSFSGRHMLCDALKDSKVVVIVARNESDTFESSAPVLTE---LTLQIC 496
           +E++HVD + +        +LC   +  KV  I+ RN     +SS   L E   LT  + 
Sbjct: 295 LEINHVDAEIQPIDMWNFFVLCTTEELDKVTAIINRNLKIQGKSSRETLKEVYYLTRDVR 354

Query: 497 NTCP 508
            T P
Sbjct: 355 KTLP 358


>U55370-7|AAA97998.2|  388|Caenorhabditis elegans Hypothetical
           protein K03B4.1 protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -1

Query: 447 VSDSFLATITTTLESFKASHSICRPENDDTLHFVST*L--NSIP 322
           +S S+ A     LE+     S C P  DD+ HF  T L  NS+P
Sbjct: 166 ISPSYFAR-AAILEALNIDQSTCIPFTDDSSHFPLTYLVGNSLP 208


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,137,042
Number of Sequences: 27780
Number of extensions: 269893
Number of successful extensions: 777
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)