Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16j19
         (672 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.5  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   2.0  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   2.6  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   2.6  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   6.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   6.1  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 544 SHGTTCSRNTKIAWRVQPSDVARLCGTE 627
           SH TT + N    W ++P+D A   G++
Sbjct: 668 SHSTTLTVNVPPRWILEPTDKAFAQGSD 695


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/44 (22%), Positives = 21/44 (47%)
 Frame = -1

Query: 459 LDSNVSDSFLATITTTLESFKASHSICRPENDDTLHFVST*LNS 328
           +D N+ D F  T  T  +   + +   RP  ++ +  + T ++S
Sbjct: 273 IDDNIDDEFKGTYKTLYKQMWSQNITERPTTNEVITKIDTLISS 316


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = -3

Query: 661 EVRQYRVSSHTVQFHTAEQRPRVVHATQSLYFGYKW 554
           ++RQYR++     FH      + + A   ++ G K+
Sbjct: 489 KIRQYRLNHKPFNFHITINADKPMKAAIRIFIGPKY 524


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = -3

Query: 661 EVRQYRVSSHTVQFHTAEQRPRVVHATQSLYFGYKW 554
           ++RQYR++     FH      + + A   ++ G K+
Sbjct: 489 KIRQYRLNHKPFNFHITINADKPMKAAIRIFIGPKY 524


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 355 TLCVYVT*FHTVAARCSYIVKRYFI 281
           TLCV ++   TV   C Y  K Y I
Sbjct: 739 TLCVAISLSATVTLVCLYSPKIYII 763


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 355 TLCVYVT*FHTVAARCSYIVKRYFI 281
           TLCV ++   TV   C Y  K Y I
Sbjct: 829 TLCVAISLSATVTLVCLYSPKIYII 853


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,300
Number of Sequences: 438
Number of extensions: 3570
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)