Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte16j13
(668 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 35 0.012
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF... 30 0.26
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb... 28 1.1
SPBC8D2.15 |||mitochondrial lipoic acid synthetase |Schizosaccha... 28 1.4
SPCC70.09c |mug9||conserved fungal protein|Schizosaccharomyces p... 28 1.4
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||... 27 3.2
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual 26 5.6
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo... 26 5.6
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 26 5.6
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz... 26 5.6
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc... 26 5.6
SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc... 25 7.5
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 25 7.5
SPBC21B10.12 |rec6||meiotic recombination protein Rec6|Schizosac... 25 9.9
SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc... 25 9.9
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 9.9
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 34.7 bits (76), Expect = 0.012
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Frame = +1
Query: 331 KHDITFAYDATVLELKAHLERICGVPQSAQKLIIK-GMARDEMTLRKAGIVKGGKVMLVG 507
K+D+ + T LK L + VP QK+I+K G +D++ L GI ++++G
Sbjct: 12 KYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATLLMMG 71
Query: 508 SKMD-----DILAVKSVPKEILEE 564
+ + I AV+SV +E E+
Sbjct: 72 TAGELPTAMPIPAVESVEQEESED 95
>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
XPF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 892
Score = 30.3 bits (65), Expect = 0.26
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = +1
Query: 478 VKGGKVMLVGSKMDDILAVKSVPKEILEEKATTQTSKEPLCMQKIHRKVLDKGI 639
V G ++LVG+ +DDI ++ + LE+K T + E + + K + L+ GI
Sbjct: 47 VPGSLLLLVGANVDDIELIQHEMESHLEKKLIT-VNTETMSVDKREKSYLEGGI 99
>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = -1
Query: 596 NGSLLVWVVAFSSKISFGTLFTANMSSILDPTSI 495
+ +LL +VA + +SFG+L + N+ ++ D TSI
Sbjct: 247 SSTLLYLLVAITGYLSFGSLASGNIIAMYDNTSI 280
>SPBC8D2.15 |||mitochondrial lipoic acid synthetase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 370
Score = 27.9 bits (59), Expect = 1.4
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = +1
Query: 187 MDKPVVNEKILQIDPPAECSAGTSDTTEESEVCEIPEQVEFTVVFNKVKHDITFAYDATV 366
MDKP+ ++ ++D E G+ S + +V FN++KHD+ ++ TV
Sbjct: 43 MDKPLTADEAFELDRKVELPNGSIHKRLPSW---LKTKVPLGTNFNRIKHDLRGSHLHTV 99
Query: 367 LE 372
E
Sbjct: 100 CE 101
>SPCC70.09c |mug9||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 208
Score = 27.9 bits (59), Expect = 1.4
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = +1
Query: 457 TLRKAGIVKGGKVMLVGSKMDDILAVKSVPKEILEEKATTQTSKEPLCMQK-IHRKVLDK 633
T+R V GKV K + +K+VP E K SK P+ Q+ I V+ K
Sbjct: 65 TIRAWQDVAEGKVPASNEKAARVSNLKTVPSLKRENKEVNANSKPPVKQQEVIESTVISK 124
Query: 634 GIPPDV 651
P V
Sbjct: 125 SQSPSV 130
>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 709
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 527 NMSSILDPTSITFPPLTIPAFLSVISSRAIPL 432
N S++L PTS +F T+ A + S+ IP+
Sbjct: 620 NSSTLLSPTSTSFTSYTVSATATPTSTSHIPI 651
>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
Length = 629
Score = 25.8 bits (54), Expect = 5.6
Identities = 17/82 (20%), Positives = 38/82 (46%)
Frame = +1
Query: 100 HSMDHIASEKGDTTENQDPNSVSNGATKIMDKPVVNEKILQIDPPAECSAGTSDTTEESE 279
+++ H A ++GDTT+ + P +N K+++ + Q P + S ++ +
Sbjct: 286 NTLSHQADDEGDTTDEETPELQNN---KLLNLSTPKKSFGQ-TPRIKTELSESPNSQRTL 341
Query: 280 VCEIPEQVEFTVVFNKVKHDIT 345
+ +P +E + K D+T
Sbjct: 342 LSAVPTPLELSAEL-AYKEDLT 362
>SPAC22E12.14c |sck2||serine/threonine protein kinase
Sck2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 646
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = -1
Query: 332 FTLLKTTV--NSTCSGISQTSLSSVVSDVPAEHSAGGSICNIFSL 204
F L K +V NS + ++ L+S+ ++ P E GGS+ ++ +L
Sbjct: 10 FGLSKKSVSTNSAKGSLPRSPLASIQTNQPVEEGEGGSLPSVSNL 54
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 25.8 bits (54), Expect = 5.6
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = -1
Query: 569 AFSSKISFGTLFTANMSSILDPTSITFPPLTIPAFLSVISSRAIPLMINF*ADCGTP 399
A +S +S T +A M+S PT++ T P + +SS +I + N A+ TP
Sbjct: 205 ASASALSSDTGRSATMNSTTFPTAMKSQSTTKPTLSNSVSSPSIQVSNNQNANNSTP 261
>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 603
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 233 GGSICNIFSLTTGLSMILVAPFDTEFG 153
GG IC+ F ++T IL+ F FG
Sbjct: 375 GGGICDYFGISTDHVDILMGTFTKSFG 401
>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +1
Query: 616 RKVLDKGIPPDVMPGIK 666
RKVL+K IPPD P I+
Sbjct: 4 RKVLNKYIPPDYDPSIR 20
>SPCC622.12c |||NADP-specific glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 451
Score = 25.4 bits (53), Expect = 7.5
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = +1
Query: 472 GIVKGGKVMLVGSKMDDILAVKSVPKEILEEKATTQTSK 588
G ++ K+ V ++ +L + S+P+ +LE + T + K
Sbjct: 18 GSIESSKLFEVHPELKRVLPIISIPERVLEFRVTWEDDK 56
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 526 LAVKSVPKEILEEKATTQTSKEPLCMQKIHRKVLDK 633
L+ S P EI+ E ATT+ + + +Q R++ ++
Sbjct: 841 LSASSTPSEIMTEIATTKDKRTKMLLQLTLRRMCNE 876
>SPBC21B10.12 |rec6||meiotic recombination protein
Rec6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 25.0 bits (52), Expect = 9.9
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = +1
Query: 205 NEKILQIDPPAECSAGTSDTTEESEVCEIPEQVEFTVVFNKVKHDITFAYDATVLEL 375
+E L D CS+ D+TEE+ C + E + + V D + D V ++
Sbjct: 121 SESSLLDDSQLLCSSPPVDSTEEARTCNVEEDQDEILSVALVTTDTILSSDNFVNDM 177
>SPBC947.08c |||histone promoter control protein Hpc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 338
Score = 25.0 bits (52), Expect = 9.9
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +1
Query: 442 ARDEMTLRKAGIVKGGKVMLVGSKMDDILAVKSVPKEILEEKATTQTSKE 591
+ DE LR I K L +K ++ VPK++ +++A T SKE
Sbjct: 175 SEDEQPLRTLSIEMAAKNALKEAKRENA----KVPKDVSKKEAKTTKSKE 220
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -3
Query: 588 FTSLGCSFFF*-NFLWDTFHSQYVIHFGSYKHNFSS 484
F SL S+ F NF+W TFH + + +F S
Sbjct: 3732 FISLKKSYSFSFNFIWSTFHQMLNVVLENRNQDFKS 3767
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,640,444
Number of Sequences: 5004
Number of extensions: 50703
Number of successful extensions: 196
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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