Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16j13
         (668 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    25   0.65 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   6.1  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              22   6.1  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   6.1  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   6.1  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    21   8.0  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.65
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +1

Query: 154 PNSVSNGATKIMDKPVVNEKILQIDPPAECSAGTSDTTEES 276
           P  +SNG T ++D    +      D   +C      TTEE+
Sbjct: 350 PGQISNGYTPVLDCHTAHIACKFADIKEKCDRRNGKTTEEN 390


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 426 NHQRYGSR*NDAQESWNRQRRKSYACRIQNG 518
           ++++ G+R ND +++ NRQ         QNG
Sbjct: 467 DNKQNGNRQNDNKQNGNRQNDNKQNGNRQNG 497



 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 426 NHQRYGSR*NDAQESWNRQRRKSYACRIQNG 518
           ++++ G+R ND +++ NRQ         QNG
Sbjct: 477 DNKQNGNRQNDNKQNGNRQNGNKQNDNKQNG 507


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 403 VPQSAQKLIIKGMARDEMTLRKAGIVKGG 489
           VPQ+A K +I     ++ TLR    + GG
Sbjct: 58  VPQAANKGMINQYGGEQPTLRLLCSIAGG 86


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 542 TLFTANMSSILDPTSITFPPL 480
           T+F   ++ I+ PTS+T P L
Sbjct: 279 TVFFLLLAEIIPPTSLTVPLL 299


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 325 KVKHDITFAYDATVLELKAHL 387
           KVKH  T  Y + VLE + ++
Sbjct: 448 KVKHSATLGYISRVLEKEPYV 468


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/40 (22%), Positives = 20/40 (50%)
 Frame = +1

Query: 322 NKVKHDITFAYDATVLELKAHLERICGVPQSAQKLIIKGM 441
           +K K+ I  +    +++     + +CG PQ+   +  +GM
Sbjct: 44  HKCKYGIAMSSACGIVQCAKGPDELCGGPQNYLGICAEGM 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,535
Number of Sequences: 438
Number of extensions: 3728
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)