Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16j11
         (450 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    27   1.0  
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch...    24   9.4  
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    24   9.4  

>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 165 LKLHNPFQHFYPNAKESNVFRAY 97
           + L N FQHF+   KES  F +Y
Sbjct: 68  MHLENQFQHFHEPNKESGAFGSY 90


>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 747

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 314 VKN*KQKFGVSVFQLLQSPIIGLNV 240
           +KN K+  G+   QLL+ P+  L++
Sbjct: 217 IKNDKEALGIQAQQLLEEPVENLHL 241


>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +2

Query: 299 ASSFLLSHKKQCSYNCDSFLSKPIVII 379
           ASS +    +  +  C+ FL+KP+ ++
Sbjct: 469 ASSLMADRNEALAAGCNDFLTKPVSLV 495


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,950,250
Number of Sequences: 5004
Number of extensions: 40696
Number of successful extensions: 92
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)