Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16j11
         (450 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0055 + 476204-476388,476481-476543,476684-476800,476920-47...    29   2.3  
01_07_0288 + 42534552-42534558,42535302-42537280,42537367-425375...    28   3.0  
07_01_0927 - 7784564-7784656,7785182-7785225,7785946-7785970,778...    27   9.2  

>06_01_0055 +
           476204-476388,476481-476543,476684-476800,476920-477328,
           477448-477638,477706-477871
          Length = 376

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 180 CISCFLKLHNPFQHFYPNAKESNVFRAYVCCLFNFI 73
           C+SC+  LH+     YP+    N F     C+F+F+
Sbjct: 197 CLSCWFLLHSRLAKKYPHVYSCNAF----MCMFSFL 228


>01_07_0288 +
           42534552-42534558,42535302-42537280,42537367-42537513,
           42537982-42538526,42538906-42538981,42539357-42539437
          Length = 944

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 186 RYCISCFLKLHNPFQHFYPNAKESNVFR 103
           R C SCFLKL+N       + K+ NV R
Sbjct: 502 RVCDSCFLKLNNAVDSSAISKKKENVLR 529


>07_01_0927 -
           7784564-7784656,7785182-7785225,7785946-7785970,
           7786357-7786497,7786590-7786619,7786686-7786762,
           7786816-7786855,7787055-7787122,7787782-7789864
          Length = 866

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 121 LGIWVKVLKWIVQFQE 168
           L +W K+L W++Q Q+
Sbjct: 824 LDLWAKILNWVIQVQQ 839


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,136,823
Number of Sequences: 37544
Number of extensions: 209134
Number of successful extensions: 367
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)