Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16j11
         (450 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73102-17|CAA97418.2|  375|Caenorhabditis elegans Hypothetical p...    30   0.89 
AF038618-1|AAB92068.2|  386|Caenorhabditis elegans Hypothetical ...    29   1.2  

>Z73102-17|CAA97418.2|  375|Caenorhabditis elegans Hypothetical
           protein B0035.16 protein.
          Length = 375

 Score = 29.9 bits (64), Expect = 0.89
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +2

Query: 188 GRHIQTSNY*LNFLVSLEHSNQLLEIGEVGKRTPQIFASSFLLSHKK 328
           G++++  ++ L F VS  HS+    I   G   P ++AS FL++H K
Sbjct: 253 GKYLEARSH-LGFFVSHIHSDTGDIIACEGSHHPDLYASRFLINHPK 298


>AF038618-1|AAB92068.2|  386|Caenorhabditis elegans Hypothetical
           protein F42G8.9 protein.
          Length = 386

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +2

Query: 152 LCNFKKQEIQYLGRHIQTSNY*LNFLVSLEHSNQLLEIGEVGKRTPQIFAS 304
           LCN+ K   +YLG+   +  + L+F+  LE     L +  VG     +F S
Sbjct: 159 LCNYIKNNNKYLGKK-SSGTHQLDFIQKLESIGGALVVSNVGSDVDIVFES 208


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,593,744
Number of Sequences: 27780
Number of extensions: 219008
Number of successful extensions: 522
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)