Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte16j10
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    27   0.14 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   6.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   6.8  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 27.5 bits (58), Expect = 0.14
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 517 MQLELKCCGVNSNLDWYKHRSSYPPACCGRASN 615
           +Q  L+CCGV+S  D+  +    P +CC    N
Sbjct: 139 IQKNLQCCGVHSLSDY--NDKPIPASCCNSPEN 169


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 475 ASSPAPCSRSERPARGERATG 413
           AS+P+  + S  PA+G  A G
Sbjct: 518 ASAPSSSTSSSPPAKGAAAAG 538


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 191 HAADPPKMAPPLNKSPAHANKTKPLL 114
           + A PP +A PLN +P      + LL
Sbjct: 210 YTACPPTLACPLNPNPQPLTGQQELL 235


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,751
Number of Sequences: 438
Number of extensions: 4183
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)